Browse Element(s) Details


OsAffx.30758.1.S1_at

Description tigr:9640.m00005
TID=OsAffx.30758.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0105011/11hypothetical protein
LOC_Os11g0106011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01010Os.18160.1.S1_s_at11/1112+1760..4428RNA recognition motif family protein, expressed
LOC_Os12g01020OsAffx.19438.1.S1_at11/1112+4477..7440hypothetical protein
LOC_Os12g01020OsAffx.19438.2.S1_x_at3/1112+4477..7440hypothetical protein
LOC_Os12g01030Os.51042.1.S1_at8/1112+11806..13099hydrolase, alpha/beta fold family protein
LOC_Os12g01040OsAffx.30757.1.S1_at11/1112+24538..26007Exo70 exocyst complex subunit family protein
LOC_Os12g01050OsAffx.30758.1.S1_at11/1112+27025..28438hypothetical protein
LOC_Os12g01050Os.27037.1.A1_at1/1112+27025..28438hypothetical protein
LOC_Os12g01060Os.27486.2.S1_at11/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01060Os.15933.1.A1_s_at11/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01060OsAffx.31533.1.S1_x_at10/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01080Os.27486.1.S1_x_at3/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.27486.1.S1_at3/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.53942.1.S1_x_at2/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.53942.1.S1_at1/1112+41336..41868CCT motif family protein
LOC_Os12g01090NANA12+42782..49102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01100OsAffx.30760.1.S1_at11/1112+49744..50678hypothetical protein
LOC_Os12g01110OsAffx.30761.1.S1_at11/1112+51050..53138hypothetical protein
LOC_Os12g01110OsAffx.30761.2.S1_s_at11/1112+51050..53138hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30758.1.S1_at--553--4072Chr12:28364..28388 (25 bp)
CGAGCACGACCCCAGAGGTGAAATG
LOC_Os12g01050
OsAffx.30758.1.S1_at--313--8972Chr12:28346..28370 (25 bp)
TGAAATGCAGCCTAACAGAGGTGGT
LOC_Os12g01050
OsAffx.30758.1.S1_at--872--7472Chr12:27915..28350 (25 bp)
GTGGTCGAAGGTGGCCTGATCTACC
LOC_Os12g01050
OsAffx.30758.1.S1_at--124--4293Chr12:27820..27844 (25 bp)
CCTGCCCCATGGTTGAGGTGGTCGA
LOC_Os12g01050
OsAffx.30758.1.S1_at--565--9692Chr12:27772..27796 (25 bp)
TCAACGAAGAAACGGTGGTACCTCT
LOC_Os12g01050
OsAffx.30758.1.S1_at--474--2632Chr12:27243..27733 (25 bp)
AACCTCGGTGCCACGAATCAGGACA
LOC_Os12g01050
OsAffx.30758.1.S1_at--820--3972Chr12:27238..27728 (25 bp)
CGGTGCCACGAATCAGGACAAATGT
LOC_Os12g01050
OsAffx.30758.1.S1_at--779--7592Chr12:27199..27223 (25 bp)
GGGCACAGATCAGTTCTCCAGTAGT
LOC_Os12g01050
OsAffx.30758.1.S1_at--494--1232Chr12:27188..27212 (25 bp)
AGTTCTCCAGTAGTGTAGATGCGAA
LOC_Os12g01050
OsAffx.30758.1.S1_at--1027--8212Chr12:27072..27096 (25 bp)
GGCAATGGGTACATGAGAATCATCA
LOC_Os12g01050
OsAffx.30758.1.S1_at--1094--5232Chr12:27056..27080 (25 bp)
GAATCATCAACAAGGAGGCCACGTT
LOC_Os12g01050
Target Sequence 
CGAGCACGACCCCAGAGGTGAAATGCAGCCTAACAGAGGTGGTCGAAGGTGGCCTGATCTACCCNACGTCGCTCCACATC
ATTGCCGCCTCCAGTTCCCGCCGCCTCATGCNCCACCACCTGCCGCCTCCCCTCCTGCCCCATGGTTGAGGTGGTCGATG
GTGAGGCGGGTGCCCCATGGGTCAACGAAGAAACGGTGGTACCTCTCNAGCGTCAAGGGCCCTCCCTGCATCTCCCTCCC
TCGCAACCTCGGTGCCACGAATCAGGACAAATGTGATTTTTGCCATCGGGGCACAGATCAGTTCTCCAGTAGTGTAGATG
CGAAGGAGGCAGGAGGTGGAGGNGGCGAGGGCAAAGGCGGAGTCAAGGGAGAGGGTGATGCGTGTGTAGTGTCGGCGAGG
GTGGAGGGAGGCGGAGGCAATGGGTACATGAGAATCATCAACAAGGAGGCCACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis