Browse Element(s) Details


OsAffx.30760.1.S1_at

Description tigr:9639.m00011
TID=OsAffx.30760.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0110011/11hypothetical protein
LOC_Os12g0110011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01050OsAffx.30757.1.S1_at11/1111+26139..27608Exo70 exocyst complex subunit family protein
LOC_Os11g01060OsAffx.30758.1.S1_at11/1111+28626..30038hypothetical protein
LOC_Os11g01074Os.15933.1.A1_s_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.2.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_x_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074OsAffx.31533.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01090NANA11+44371..50691retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01100OsAffx.30760.1.S1_at11/1111+51332..52266hypothetical protein
LOC_Os11g01109OsAffx.30761.2.S1_s_at11/1111+52703..54852hypothetical protein
LOC_Os11g01109OsAffx.30761.1.S1_at4/1111+52703..54852hypothetical protein
LOC_Os11g01118NANA11+56826..57134hypothetical protein
LOC_Os11g01130OsAffx.31534.1.S1_at11/1111+67344..67955Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30760.1.S1_at--598--2932Chr12:50131..50154 (24 bp)
AAGGCCCCGCCTATGCCTAAGAGGA
LOC_Os12g01100
OsAffx.30760.1.S1_at--216--6232Chr12:50156..50180 (25 bp)
GAGGCCTGGCACGAAATGTGAAGCA
LOC_Os12g01100
OsAffx.30760.1.S1_at--633--232Chr12:50180..50351 (25 bp)
ATATCAGAAGTACGCTTGCCGGAAG
LOC_Os12g01100
OsAffx.30760.1.S1_at--331--3812Chr12:50399..50423 (25 bp)
CTCCGGCGGCAACGATAATAATGCA
LOC_Os12g01100
OsAffx.30760.1.S1_at--1114--9732Chr12:50417..50441 (25 bp)
TAATGCACCTGCACATGAGCTGCCG
LOC_Os12g01100
OsAffx.30760.1.S1_at--285--9112Chr12:50477..50501 (25 bp)
TGCTGCAATCATCCCAACAAGAAGT
LOC_Os12g01100
OsAffx.30760.1.S1_at--109--7732Chr12:50512..50536 (25 bp)
GGTGGCCAGAAATGCAGGCGTCATT
LOC_Os12g01100
OsAffx.30760.1.S1_at--9--8412Chr12:50559..50583 (25 bp)
GGCGCGGGCATGAATCTCCACCTGT
LOC_Os12g01100
OsAffx.30760.1.S1_at--867--4072Chr12:50585..50609 (25 bp)
CGACGCCAACGAGATGGAGCAGGTT
LOC_Os12g01100
OsAffx.30760.1.S1_at--141--6252Chr12:50597..50621 (25 bp)
GATGGAGCAGGTTGCTGCCTACGTT
LOC_Os12g01100
OsAffx.30760.1.S1_at--674--1012Chr12:50605..50629 (25 bp)
AGGTTGCTGCCTACGTTGGCGTCTC
LOC_Os12g01100
Target Sequence 
AAGGCCCCGCCTATGCCTAAGAGGAGGAGGCCTGGCACGAAATGTGAAGCATATCAGAAGTACGCTTGCCGGAAGAGGCT
TGCGGACGAGAGGGCGAGGGTGAAGGGCCGCTTCGTCTCCAGCTCCGGCGGCAACGATAATAATGCACCTGCACATGAGC
TGCCGCCGTCGCTTGTCAATCTCAGCGATGGTGNTGCTGCTGCTGCAATCATCCCAACAAGAAGTGTGCCGGAGTGGTGG
CCAGAAATGCAGGCGTCATTGGCCAGGGATGAGATGTGTGGCGGCGCGGGCATGAATCTCCACCTGTGCGACGCCAACGA
GATGGAGCAGGTTGCTGCCTACGTTGGCGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis