Browse Element(s) Details


Os.27486.2.S1_at

Description gb:AK058862.1
DB_XREF= gi:32968880
TID=Os.27486.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-G05, full insert sequence.
FL= gb:AK058862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0106011/11RNase P subunit p30 family protein
LOC_Os11g0107411/11RNase P subunit p30 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01030Os.51042.1.S1_at8/1112+11806..13099hydrolase, alpha/beta fold family protein
LOC_Os12g01040OsAffx.30757.1.S1_at11/1112+24538..26007Exo70 exocyst complex subunit family protein
LOC_Os12g01050OsAffx.30758.1.S1_at11/1112+27025..28438hypothetical protein
LOC_Os12g01050Os.27037.1.A1_at1/1112+27025..28438hypothetical protein
LOC_Os12g01060Os.27486.2.S1_at11/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01060Os.15933.1.A1_s_at11/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01060OsAffx.31533.1.S1_x_at10/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01080Os.27486.1.S1_x_at3/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.27486.1.S1_at3/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.53942.1.S1_x_at2/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.53942.1.S1_at1/1112+41336..41868CCT motif family protein
LOC_Os12g01090NANA12+42782..49102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01100OsAffx.30760.1.S1_at11/1112+49744..50678hypothetical protein
LOC_Os12g01110OsAffx.30761.1.S1_at11/1112+51050..53138hypothetical protein
LOC_Os12g01110OsAffx.30761.2.S1_s_at11/1112+51050..53138hypothetical protein
LOC_Os12g01120OsAffx.31534.1.S1_at11/1112+63393..64004Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0000213molecular_functiontRNA-intron endonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27486.2.S1_at--147--1532Chr12:37617..37737 (25 bp)
AGCATCCAAGGTATGGTTTTTTGAG
LOC_Os12g01060
Os.27486.2.S1_at--233--10332Chr12:37729..37753 (25 bp)
TTTTTTGAGGATACCGCTAAACACG
LOC_Os12g01060
Os.27486.2.S1_at--768--6472Chr12:37738..37762 (25 bp)
GATACCGCTAAACACGAATTCCTTG
LOC_Os12g01060
Os.27486.2.S1_at--422--4832Chr12:37744..37768 (25 bp)
GCTAAACACGAATTCCTTGTCTGTT
LOC_Os12g01060
Os.27486.2.S1_at--535--1852Chr12:37751..37775 (25 bp)
ACGAATTCCTTGTCTGTTATCAGTG
LOC_Os12g01060
Os.27486.2.S1_at--158--9252Chr12:37757..37781 (25 bp)
TCCTTGTCTGTTATCAGTGTGATAT
LOC_Os12g01060
Os.27486.2.S1_at--907--2452Chr12:37793..37817 (25 bp)
AACAAGAGTTGGTACTTGACTTCTT
LOC_Os12g01060
Os.27486.2.S1_at--660--6032Chr12:37798..37822 (25 bp)
GAGTTGGTACTTGACTTCTTTTTAT
LOC_Os12g01060
Os.27486.2.S1_at--934--1332Chr12:37834..37858 (25 bp)
AGAGATATTGTTGCTTGAACTGTGT
LOC_Os12g01060
Os.27486.2.S1_at--939--1952Chr12:37852..37876 (25 bp)
ACTGTGTGACAGGATACTCTTTATT
LOC_Os12g01060
Os.27486.2.S1_at--1009--5652Chr12:37859..37883 (25 bp)
GACAGGATACTCTTTATTTAGATAA
LOC_Os12g01060
Target Sequence 
AGCATCCAAGGTATGGTTTTTTGAGGATACCGCTAAACACGAATTCCTTGTCTGTTATCAGTGTGATATGAATAATGAAA
AACAAGAGTTGGTACTTGACTTCTTTTTATATTGTATTGATAGAGATATTGTTGCTTGAACTGTGTGACAGGATACTCTT
TATTTAGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27486.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis