Browse Element(s) Details


OsAffx.31533.1.S1_x_at

Description tigr:9640.m00006
TID=OsAffx.31533.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribonuclease p protein subunit p30 (ec 3.1.26.5) (rnasep protein p30) (rnase p subunit 2). (human, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0106010/11RNase P subunit p30 family protein
LOC_Os11g0107410/11RNase P subunit p30 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01030Os.51042.1.S1_at8/1112+11806..13099hydrolase, alpha/beta fold family protein
LOC_Os12g01040OsAffx.30757.1.S1_at11/1112+24538..26007Exo70 exocyst complex subunit family protein
LOC_Os12g01050OsAffx.30758.1.S1_at11/1112+27025..28438hypothetical protein
LOC_Os12g01050Os.27037.1.A1_at1/1112+27025..28438hypothetical protein
LOC_Os12g01060Os.27486.2.S1_at11/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01060Os.15933.1.A1_s_at11/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01060OsAffx.31533.1.S1_x_at10/1112+34977..38954RNase P subunit p30 family protein
LOC_Os12g01080Os.27486.1.S1_x_at3/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.27486.1.S1_at3/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.53942.1.S1_x_at2/1112+41336..41868CCT motif family protein
LOC_Os12g01080Os.53942.1.S1_at1/1112+41336..41868CCT motif family protein
LOC_Os12g01090NANA12+42782..49102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01100OsAffx.30760.1.S1_at11/1112+49744..50678hypothetical protein
LOC_Os12g01110OsAffx.30761.1.S1_at11/1112+51050..53138hypothetical protein
LOC_Os12g01110OsAffx.30761.2.S1_s_at11/1112+51050..53138hypothetical protein
LOC_Os12g01120OsAffx.31534.1.S1_at11/1112+63393..64004Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0000213molecular_functiontRNA-intron endonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31533.1.S1_x_at--2--4872Chr12:36843..36867 (25 bp)
GCTAGAGTTGCCTCCATGTGGGAAA
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--187--5572Chr12:36864..36888 (25 bp)
GAAAGATGATGAGGCGCCACCAGAT
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--60--6432Chr12:36886..36910 (25 bp)
GATCTTGCAGCTCAATTGCACTGTA
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--785--2912Chr12:36919..36943 (25 bp)
AAGGATGTTATGATGCCACCGCAAG
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--259--10452Chr12:36988..37012 (25 bp)
TTAGTGGAACATACTCCCTGTGGTC
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--302--8672Chr12:37006..37030 (25 bp)
TGTGGTCCAGAGACTGCCTTGACTG
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--232--4452Chr12:37021..37045 (25 bp)
GCCTTGACTGCTTTTCTTTATGATA
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--796--6532Chr12:37566..37590 (25 bp)
GATTTATGTTCCTTTCTTGGGCTTC
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--574--3632Chr12:37587..37611 (25 bp)
CTTCCTCAAGTCTGTGTCCTTTAAG
LOC_Os12g01060
OsAffx.31533.1.S1_x_at--162--5571NONE
GAAAGCATCCAAGGGACTGACAAAT
NONE
OsAffx.31533.1.S1_x_at--714--152Chr12:38769..38793 (25 bp)
ATTATGGACGTGGTACTGCCCTATT
LOC_Os12g01060
Target Sequence 
GCTAGAGTTGCCTCCATGTGGGAAAGATGATGAGGCGCCACCAGATCTTGCAGCTCAATTGCACTGTAATTCATGCAAGG
ATGTTATGATGCCACCGCAAGTTATAAGCGATGAAGTAGAGCCAGTTGACAGAGGAGCAACTATTTTAGTGGAACATACT
CCCTGTGGTCCAGAGACTGCCTTGACTGCTTTTCTTTATGATAAAGGATCCATTGATACAACCAGTAAAACTGATGAGTT
GGCAAAGCAAAACTCAAACTCTCTGGAGGGAGATGTTGCTAAAATACATGAACAACTACTAAACTATTCTTATGCTAGTG
GTGAGGTGGAGATATCCCTAACTAGATCAGAAAAGCGAACCAAAAAATTAAGGTCGCAACATCCGATTTATGTTCCTTTC
TTGGGCTTCCTCAAGTCTGTGTCCTTTAAGAAGAAAGCATCCAAGGGACTGACAAATCATATTTTATCACGTATTGATTA
TGGACGTGGTACTGCCCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31533.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis