Browse Element(s) Details


Os.15933.1.A1_s_at

Description gb:CB684538
DB_XREF= gi:29688263
DB_XREF=OSJNEf14C15.r
CLONE=OSJNEf14C15
TID=Os.15933.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15933 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200806.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0107411/11RNase P subunit p30 family protein, expressed
LOC_Os12g0106011/11RNase P subunit p30 family protein
LOC_Os12g0768011/11RNase P subunit p30 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01040Os.51042.1.S1_at11/1111+13301..14796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g01050OsAffx.30757.1.S1_at11/1111+26139..27608Exo70 exocyst complex subunit family protein
LOC_Os11g01060OsAffx.30758.1.S1_at11/1111+28626..30038hypothetical protein
LOC_Os11g01074Os.15933.1.A1_s_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.2.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_x_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074OsAffx.31533.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01090NANA11+44371..50691retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01100OsAffx.30760.1.S1_at11/1111+51332..52266hypothetical protein
LOC_Os11g01109OsAffx.30761.2.S1_s_at11/1111+52703..54852hypothetical protein
LOC_Os11g01109OsAffx.30761.1.S1_at4/1111+52703..54852hypothetical protein
LOC_Os11g01118NANA11+56826..57134hypothetical protein
LOC_Os11g01130OsAffx.31534.1.S1_at11/1111+67344..67955Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0000213molecular_functiontRNA-intron endonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15933.1.A1_s_at--816--8413Chr12:35731..35755 (25 bp)
GGCCTTTCTACCCAACGAGCCAAAG
LOC_Os12g01060
Os.15933.1.A1_s_at--951--5853Chr12:35747..35771 (25 bp)
GAGCCAAAGCTGCTCTATCCGTCAA
LOC_Os12g01060
Os.15933.1.A1_s_at--268--9553Chr12:35760..35783 (24 bp)
TCTATCCGTCAACTGCAGGTCACTG
LOC_Os12g01060
Os.15933.1.A1_s_at--470--4813Chr12:35905..35929 (25 bp)
GCTCTGAGGAAAAAGCACTTCTACA
LOC_Os12g01060
Os.15933.1.A1_s_at--799--1713Chr12:35935..35959 (25 bp)
ACCATTAGAATCGACAGGCTGTTAC
LOC_Os12g01060
Os.15933.1.A1_s_at--573--593Chr12:36019..36043 (25 bp)
ATGCCTCATGAAGTAGATCTGCTAT
LOC_Os12g01060
Os.15933.1.A1_s_at--79--3633Chr12:36115..36139 (25 bp)
CTTGATATAAATCCAGAACCTTCTG
LOC_Os12g01060
Os.15933.1.A1_s_at--499--3673Chr12:36203..36227 (25 bp)
CTTATGATGGTGATGAGTCCCTCTT
LOC_Os12g01060
Os.15933.1.A1_s_at--1035--6093Chr12:36217..36241 (25 bp)
GAGTCCCTCTTTGTCGAGCAGCAAG
LOC_Os12g01060
Os.15933.1.A1_s_at--1006--10173Chr12:36269..36293 (25 bp)
TATTCCCAGTTGAAACTCAAGAAGG
LOC_Os12g01060
Os.15933.1.A1_s_at--712--3233Chr12:36286..36310 (25 bp)
CAAGAAGGGCCTGTGCAAGTTAGCA
LOC_Os12g01060
Target Sequence 
GGCCTTTCTACCCAACGAGCCAAAGCTGCTCTATCCGTCAACTGCAGGTCACTGGTTTCCAANGCTCTGAGGAAAAAGCA
CTTCTACAAGGAAACCATTAGAATCGACAGGCTGTTACCAAATANNCAGTTGAATTCAGCAGACTTCAAGCTTGCTGACT
GGATTAGTTGGGATCCTATGCCTCATGAAGTAGATCTGCTATCTTTGGAATTGCCAGCTTACAAAGGAGAACCACNATCT
CTTGATATAAATCCAGAACCTTCTGCCNATGAAGATGATTGAACTACTGCATTTACCTTATGATGGTGATGAGTCCCTCT
TTGTCGAGCAGCAAGAGCAGTTNAGCCATGGCAACGAAATCCTATTCCCAGTTGAAACTCAAGAAGGGCCTGTGCAAGTT
AGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15933.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis