Browse Element(s) Details


OsAffx.30757.1.S1_at

Description tigr:9639.m00005
TID=OsAffx.30757.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Exo70 exocyst complex subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0105011/11Exo70 exocyst complex subunit family protein
LOC_Os12g0104011/11Exo70 exocyst complex subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01010Os.20902.1.A1_at9/1111+162..3164Gamma-aminobutyric acid receptor-associated protein-like 2, putative, expressed
LOC_Os11g01020Os.18160.1.S1_s_at7/1111+3260..5993RNA recognition motif family protein, expressed
LOC_Os11g01030OsAffx.19438.1.S1_at11/1111+6037..9062expressed protein
LOC_Os11g01030OsAffx.19438.2.S1_x_at3/1111+6037..9062expressed protein
LOC_Os11g01040Os.51042.1.S1_at11/1111+13301..14796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g01050OsAffx.30757.1.S1_at11/1111+26139..27608Exo70 exocyst complex subunit family protein
LOC_Os11g01060OsAffx.30758.1.S1_at11/1111+28626..30038hypothetical protein
LOC_Os11g01074Os.15933.1.A1_s_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.2.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_x_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074OsAffx.31533.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01090NANA11+44371..50691retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01100OsAffx.30760.1.S1_at11/1111+51332..52266hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30757.1.S1_at--582--4132Chr12:25091..25115 (25 bp)
CGCTGACGCGCTACGTGATGAATTA
LOC_Os12g01040
OsAffx.30757.1.S1_at--564--7392Chr12:25077..25101 (25 bp)
GTGATGAATTACCTCGTCTTCCTGG
LOC_Os12g01040
OsAffx.30757.1.S1_at--158--5332Chr12:25044..25068 (25 bp)
GAGGGAGCCCTTGACCGCATAAACC
LOC_Os12g01040
OsAffx.30757.1.S1_at--742--3412Chr12:25020..25044 (25 bp)
CAGCAACAGGGATCGCCGGAGAGAT
LOC_Os12g01040
OsAffx.30757.1.S1_at--575--4252Chr12:25005..25029 (25 bp)
CCGGAGAGATCGTGGTCCATCGGTT
LOC_Os12g01040
OsAffx.30757.1.S1_at--552--7772Chr12:24976..25000 (25 bp)
GGTGCAGGTCCTGATGCGCAAAATT
LOC_Os12g01040
OsAffx.30757.1.S1_at--261--8892Chr12:24917..24941 (25 bp)
TGAGGCACCTCTTCATGGCGAACAA
LOC_Os12g01040
OsAffx.30757.1.S1_at--1050--2452Chr12:24894..24918 (25 bp)
AACACGCACTACGTGGCCAGGAAAG
LOC_Os12g01040
OsAffx.30757.1.S1_at--74--1092Chr12:24871..24895 (25 bp)
AGTGGCCAAAATTCCATCTCTCGGG
LOC_Os12g01040
OsAffx.30757.1.S1_at--321--5632Chr12:24649..24673 (25 bp)
GACAGCGGCGGTGGTACCCAAGTAC
LOC_Os12g01040
OsAffx.30757.1.S1_at--583--9872Chr12:24627..24651 (25 bp)
TACAGGATGTTGTACCGCCGGCACG
LOC_Os12g01040
Target Sequence 
CGCTGACGCGCTACGTGATGAATTACCTCGTCTTCCTGGCCGACTACGAGGGAGCCCTTGACCGCATAAACCAGCAACAG
GGATCGCCGGAGAGATCGTGGTCCATCGGTTGGTTGGTGCAGGTCCTGATGCGCAAAATTGAGGCCAAGGCGGGGAGCTA
CCGAGAGGCGGCGCTGAGGCACCTCTTCATGGCGAACAACACGCACTACGTGGCCAGGAAAGTGGCCAAAATTCCATCTC
TCGGGGACGACGACGGTGAAGCCCAAGATGCGGCNCGGCGGCACGTGGAGGCGTACGTGCGCGCGGCGTGGGGCAAGGTG
CTCAAGGCAATCGCNGCGGCGGACGGCGTGGAGGTGGAGGAGGCTGTGATGCAGGCGGTGGCGAAGCAGGAGAAGTGGGT
GGCGGCAGACGANGAGATGGGTCAGGTGCTGAGGGCGGCGGCGACAGCGGCGGTGGTACCCAAGTACAGGATGTTGTACC
GCCGGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis