Browse Element(s) Details


OsAffx.19438.1.S1_at

Description tigr:9640.m00002
TID=OsAffx.19438.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0102011/11hypothetical protein
LOC_Os11g0103011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01010Os.18160.1.S1_s_at11/1112+1760..4428RNA recognition motif family protein, expressed
LOC_Os12g01020OsAffx.19438.1.S1_at11/1112+4477..7440hypothetical protein
LOC_Os12g01020OsAffx.19438.2.S1_x_at3/1112+4477..7440hypothetical protein
LOC_Os12g01030Os.51042.1.S1_at8/1112+11806..13099hydrolase, alpha/beta fold family protein
LOC_Os12g01040OsAffx.30757.1.S1_at11/1112+24538..26007Exo70 exocyst complex subunit family protein
LOC_Os12g01050OsAffx.30758.1.S1_at11/1112+27025..28438hypothetical protein
LOC_Os12g01050Os.27037.1.A1_at1/1112+27025..28438hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19438.1.S1_at--268--5072Chr12:5034..5058 (25 bp)
GCACTCAAAGGCTGCTTCAGTCGGG
LOC_Os12g01020
OsAffx.19438.1.S1_at--270--8112Chr12:5010..5034 (25 bp)
GGACGACAGACGACGACCAAAGTGA
LOC_Os12g01020
OsAffx.19438.1.S1_at--533--3932Chr12:4892..4916 (25 bp)
CGGCGAGCTGCTACCACAAGGTGGC
LOC_Os12g01020
OsAffx.19438.1.S1_at--1160--3252Chr12:4814..4838 (25 bp)
CAACTCCAATACCAGCAGCAGACGA
LOC_Os12g01020
OsAffx.19438.1.S1_at--797--1392Chr12:4795..4819 (25 bp)
AGACGAGGATGCAACGCAGCGCTTC
LOC_Os12g01020
OsAffx.19438.1.S1_at--1059--4092Chr12:4722..4746 (25 bp)
CGACTCAGTCGTATCAGCAGCAGCA
LOC_Os12g01020
OsAffx.19438.1.S1_at--864--8952Chr12:4645..4669 (25 bp)
TGACACCTGTTGCTGTGACGACGAG
LOC_Os12g01020
OsAffx.19438.1.S1_at--485--6352Chr12:4609..4633 (25 bp)
GATGCTGGTGCGGTCGTTCCTGTCA
LOC_Os12g01020
OsAffx.19438.1.S1_at--226--7812Chr12:4598..4622 (25 bp)
GGTCGTTCCTGTCACAGCAGCAGCA
LOC_Os12g01020
OsAffx.19438.1.S1_at--382--8032Chr12:4560..4584 (25 bp)
GGAGTAGCATTAGCATTGGCTTCCA
LOC_Os12g01020
OsAffx.19438.1.S1_at--196--32Chr12:4546..4570 (25 bp)
ATTGGCTTCCATTGGGTTCTGCATG
LOC_Os12g01020
Target Sequence 
GCACTCAAAGGCTGCTTCAGTCGGGGACGACAGACGACGACCAAAGTGAAGGTGAAGGCGGTGCAGGAGCAGGTGGCCCT
GCTGGAGAGATGCGTGGCAGAGGCTGCCGGCGAGCCCCATTTCCCGTGGTCGCCGCCGTTCCCGGCGAGCTGCTACCACA
AGGTGGCGGGGAGCCTTGGCAGGATGGCGCAGCTGCTCTACCTCTACACACAGGCACATCCAACTCCAATACCAGCAGCA
GACGAGGATGCAACGCAGCGCTTCCACTGCCTCGTCTCCGCATCCCTGGAGCGAAGCGCCGACCTCCTCCTCCGACTCAG
TCGTATCAGCAGCAGCAGCAGCAGAGACGAGGAGGACCTGGAGGCCGGCATCCGGGTCAGCAGCGGCAGTGACACCTGTT
GCTGTGACGACGAGGATGCACCAGAGATGCTGGTGCGGTCGTTCCTGTCACAGCAGCAGCAGCAGCAAGATCAAGGAGTA
GCATTAGCATTGGCTTCCATTGGGTTCTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis