Browse Element(s) Details


Os.51042.1.S1_at

Description gb:AK060331.1
DB_XREF= gi:32970349
TID=Os.51042.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B05, full insert sequence.
FL= gb:AK060331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0104011/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g010308/11hydrolase, alpha/beta fold family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01010Os.20902.1.A1_at9/1111+162..3164Gamma-aminobutyric acid receptor-associated protein-like 2, putative, expressed
LOC_Os11g01020Os.18160.1.S1_s_at7/1111+3260..5993RNA recognition motif family protein, expressed
LOC_Os11g01030OsAffx.19438.1.S1_at11/1111+6037..9062expressed protein
LOC_Os11g01030OsAffx.19438.2.S1_x_at3/1111+6037..9062expressed protein
LOC_Os11g01040Os.51042.1.S1_at11/1111+13301..14796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g01050OsAffx.30757.1.S1_at11/1111+26139..27608Exo70 exocyst complex subunit family protein
LOC_Os11g01060OsAffx.30758.1.S1_at11/1111+28626..30038hypothetical protein
LOC_Os11g01074Os.15933.1.A1_s_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.2.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_x_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074OsAffx.31533.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51042.1.S1_at--50--3012Chr12:12249..12273 (25 bp)
AATGACGTGATCGACCTGGCATACA
LOC_Os12g01030
Os.51042.1.S1_at--883--5992Chr12:12209..12233 (25 bp)
GAGACGAGATCCGAGGGAACCCACT
LOC_Os12g01030
Os.51042.1.S1_at--662--2612Chr12:12192..12216 (25 bp)
AACCCACTGTGCTACAAGGGCAGGC
LOC_Os12g01030
Os.51042.1.S1_at--309--8392Chr12:11958..11982 (25 bp)
GGCGAACTCCCTCACAACATCGATG
LOC_Os12g01030
Os.51042.1.S1_at--834--512Chr12:11916..11940 (25 bp)
ATCGACTGGCTCCACCACAGGACAT
LOC_Os12g01030
Os.51042.1.S1_at--154--4912Chr12:11880..11904 (25 bp)
GCTTCACATGTGCAGGACCACGACT
LOC_Os12g01030
Os.51042.1.S1_at--894--5812Chr12:11865..11889 (25 bp)
GACCACGACTTAAGTACGTCTTTCG
LOC_Os12g01030
Os.51042.1.S1_at--434--6992Chr12:11852..11876 (25 bp)
GTACGTCTTTCGAGGCGGAGCGCAA
LOC_Os12g01030
Os.51042.1.S1_at--846--9132Chr12:11802..11826 (25 bp)
TGCGGCAAGCAAACATCATAGTGAT
NONE
Os.51042.1.S1_at--199--7412Chr12:11782..11806 (25 bp)
GTGATCACCTACCTACTATATAATA
NONE
Os.51042.1.S1_at--783--4852Chr12:11755..11779 (25 bp)
GCTAGCTAGCTGCTATACTTACTAG
NONE
Target Sequence 
AATGACGTGATCGACCTGGCATACAGGATGCAGGGGAAGCGAGACGAGATCCGAGGGAACCCACTGTGCTACAAGGGCAG
GCCCCGCCTCAAGACCGCCTACGAGCTGCTCCGCGTCAGCATCCTCATCGAGTCCACCATCCTCCCCCACGTCTCCCTCC
CCTTCCTCATCCTCCACGGCGCCGCCGACCGGGTCACCGACCCCTCCGTCAGCGACCTCCTCTACCGCTCCGCCTCCACC
ACCGACAAGACCTTCCACCTCTACACCGGCATGTGGCACGCCCTCACCTCCGGCGAACTCCCTCACAACATCGATGCCGT
CTTCCGCGACATCATCGACTGGCTCCACCACAGGACATCCCCCACCTCCGCTTCACATGTGCAGGACCACGACTTAAGTA
CGTCTTTCGAGGCGGAGCGCAAGGCCAAGCACGACGACACCATCCATTGCGGCAAGCAAACATCATAGTGATCACCTACC
TACTATATAATATGGCTAGCTAGCTGCTATACTTACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis