Browse Element(s) Details


Os.50384.1.S1_at

Description gb:AK120980.1
DB_XREF= gi:37990603
TID=Os.50384.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042A15, full insert sequence.
FL= gb:AK120980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3276010/1160S acidic ribosomal protein P2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32710OsAffx.2833.1.S1_at11/112+19425060..19426795hypothetical protein
LOC_Os02g32720NANA2+19427742..19428566hypothetical protein
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50384.1.S1_at--592--4211NONE
CCGCCGTCGTCCAAAATGAAGTTCA
NONE
Os.50384.1.S1_at--131--10671Chr02:19451138..19451162 (25 bp)
TTGCCACTCTTGCTGGTAACCCTAA
LOC_Os02g32760
Os.50384.1.S1_at--632--2611Chr02:19451115..19451139 (25 bp)
AACCCATCTGCGGAGGATCTTACAA
LOC_Os02g32760
Os.50384.1.S1_at--205--9911Chr02:19450081..19450105 (25 bp)
TACTCTTGTCTCAACTGGCTGGTAA
LOC_Os02g32760
Os.50384.1.S1_at--1065--3851Chr02:19450048..19450072 (25 bp)
CTGAGATTATTGCTTCCGGTCGGGA
LOC_Os02g32760
Os.50384.1.S1_at--892--5331Chr02:19450023..19450047 (25 bp)
GAAGTTTGCTTCTGTTCCATGTGGC
LOC_Os02g32760
Os.50384.1.S1_at--964--5891Chr02:19449952..19449976 (25 bp)
GAGCTGCTCCTCAATCTGAGGCTAA
LOC_Os02g32760
Os.50384.1.S1_at--741--1191Chr02:19449514..19449538 (25 bp)
AGTTTGTTTGACTAGGACCATTCCT
LOC_Os02g32760
Os.50384.1.S1_at--523--7971Chr02:19449500..19449524 (25 bp)
GGACCATTCCTTGGATTATACCCAT
LOC_Os02g32760
Os.50384.1.S1_at--911--8151Chr02:19449455..19449479 (25 bp)
GGCAACCTAAACACGCTTTTTGAAT
LOC_Os02g32760
Os.50384.1.S1_at--171--10511Chr02:19449329..19449353 (25 bp)
TTCAGCAAAATCAGCACCGACCATG
LOC_Os02g32760
Target Sequence 
CCGCCGTCGTCCAAAATGAAGTTCATTTCTGCCTATCTNCTTGCCACTCTTGCTGGTAACCCTAACCCATCTGCGGAGGA
TCTTACAACTATTCTGGAGTCAGTTGGAGCTGAAGTTGACCATGGCAAGATGGAGTTACTCTTGTCTCAACTGGCTGGTA
AGGATATCACTGAGATTATTGCTTCCGGTCGGGAGAAGTTTGCTTCTGTTCCATGTGGCGGAGGTGGCGTAGCTGTTGCA
GCAGCTGCTCCGGCTGCTGGTGGTGGAGCTGCTCCTCAATCTGAGGCTAAGAAAGAAGAGAAGGTGGAGGAGAAAGAAGA
ATCTGATGATNACATGGGNTTCAGTTTGTTTGACTAGGACCATTCCTTGGATTATACCCATTTTTGGTTAACTTGGGAAA
CGGCAACCTAAACACGCTTTTTGAATTACTCCATTTTGTTCTATAACAATTCAGATGCAGGATATTGCACTGANGACTAT
CTGTCGAACCATAGATTTGTTAGAAGGNTTCATTACCAATGATTTGTTTCAGCAAAATCAGCACCGACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis