Browse Element(s) Details


OsAffx.16759.1.A1_at

Description tigr:9635.m04852
TID=OsAffx.16759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g328143/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32850Os.8250.1.S1_at4/112+19497632..19498475hypothetical protein
LOC_Os02g32860Os.54236.1.S1_at11/112+19503960..19509067WGR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006827biological_processhigh affinity iron ion transport
GO:0006878biological_processcopper ion homeostasis
GO:0007568biological_processaging
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
GO:0016531molecular_functioncopper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16759.1.A1_at--303--10136Chr12:8822722..8823040 (25 bp)
TATCCCAAATATCCCAAAATCAAAG
NONE
OsAffx.16759.1.A1_at--284--2272Chr01:13089689..13089764 (25 bp)
AAATCAAAGTATCATCCTCAAATCA
NONE
OsAffx.16759.1.A1_at--563--30110Chr11:24207657..24207685 (25 bp)
AATGAATCATTCACATCACAAATTC
NONE
OsAffx.16759.1.A1_at--1075--3074Chr07:17898897..17898921 (25 bp)
AATCACAAGTTCTTAGATCCAAATG
NONE
OsAffx.16759.1.A1_at--119--5832Chr07:28730436..28730460 (25 bp)
GATCCAAATGTATCAAAAATTCGGG
NONE
OsAffx.16759.1.A1_at--833--2333Chr07:17898942..17898966 (25 bp)
AAAGAAAATTGTGCTTCCGCTGCCG
NONE
OsAffx.16759.1.A1_at--915--4532Chr08:3231390..3231414 (25 bp)
GCCCGGGCACGCTCTGGTAGAGGAG
NONE
OsAffx.16759.1.A1_at--767--8271Chr07:28730207..28730231 (25 bp)
GGCATAATGCCAAATCCGATCTGAG
NONE
OsAffx.16759.1.A1_at--248--591Chr07:28730201..28730225 (25 bp)
ATGCCAAATCCGATCTGAGGTTGTC
NONE
OsAffx.16759.1.A1_at--1076--3031Chr07:28730195..28730219 (25 bp)
AATCCGATCTGAGGTTGTCGTTTAT
NONE
OsAffx.16759.1.A1_at--958--3851Chr07:28730187..28730211 (25 bp)
CTGAGGTTGTCGTTTATGAGAGCTA
NONE
Target Sequence 
TATCCCAAATATCCCAAAATCAAAGTATCATCCTCAAATCAATGAATCATTCACATCACAAATTCTCAAAAAACTACAAC
TCAAATTCTTAAAGAAATACATCACAGATCCAATGAATCACAAGTTCTTAGATCCAAATGTATCAAAAATTCGGGAAAAA
AAAAGAAAATTGTGCTTCCGCTGCCGCCTCCCCCCTCCGGCAGAGGAGAGGGCGCCACCGGCCGCCAGCTCCCGCCATCG
CCGCGCTCCCTGCCGCCCGCGGCCCGCCGCCAGCCGCCGCCCGGGCACGCTCTGGTAGAGGAGGAGGAGGAGGAGGAGGA
GGAGAGGGGAAGGGGAGAGGGGAGAGGAGAAGACTCTGTGGCATAATGCCAAATCCGATCTGAGGTTGTCGTTTATGAGA
GCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16759.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis