Browse Element(s) Details


OsAffx.24545.1.S1_at

Description tigr:9630.m03111
TID=OsAffx.24545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3279011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24545.1.S1_at--536--7491Chr02:19463788..19464202 (25 bp)
GTGGGTCCCACATTGTCATCGTCCT
LOC_Os02g32790
OsAffx.24545.1.S1_at--1093--7791Chr02:19463791..19464205 (25 bp)
GGTCCCACATTGTCATCGTCCTCGT
LOC_Os02g32790
OsAffx.24545.1.S1_at--50--8391Chr02:19464225..19464249 (25 bp)
GGCGAGCTCCTCATCCACGTCGGAT
LOC_Os02g32790
OsAffx.24545.1.S1_at--343--4211Chr02:19464283..19464396 (25 bp)
CCCCTAAGCATCATTTGGCTAGTGA
LOC_Os02g32790
OsAffx.24545.1.S1_at--1034--1531Chr02:19464289..19464402 (25 bp)
AGCATCATTTGGCTAGTGATCCAGA
LOC_Os02g32790
OsAffx.24545.1.S1_at--732--9591Chr02:19464293..19464406 (25 bp)
TCATTTGGCTAGTGATCCAGACGAT
LOC_Os02g32790
OsAffx.24545.1.S1_at--1114--8291Chr02:19464388..19464412 (25 bp)
GGCTAGTGATCCAGACGATGAGCGT
LOC_Os02g32790
OsAffx.24545.1.S1_at--1089--6291Chr02:19464404..19464428 (25 bp)
GATGAGCGTGGAGTTCAGGCCATTC
LOC_Os02g32790
OsAffx.24545.1.S1_at--637--8551Chr02:19464412..19464436 (25 bp)
TGGAGTTCAGGCCATTCTCGTTGTC
LOC_Os02g32790
OsAffx.24545.1.S1_at--831--9631Chr02:19464418..19464442 (25 bp)
TCAGGCCATTCTCGTTGTCCTTTTT
LOC_Os02g32790
OsAffx.24545.1.S1_at--783--111Chr02:19464425..19464449 (25 bp)
ATTCTCGTTGTCCTTTTTCCTGCTG
LOC_Os02g32790
Target Sequence 
GTGGGTCCCACATTGTCATCGTCCTCGTCATGTTGCTGCTCTCTTGGGGCGAGCTCCTCATCCACGTCGGATCCACGTCC
CCATCTCGTTCAGCATCTTCACCGCCCCCTAAGCATCATTTGGCTAGTGATCCAGACGATGAGCGTGGAGTTCAGGCCAT
TCTCGTTGTCCTTTTTCCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis