Browse Element(s) Details


OsAffx.12334.2.S1_at

Description tigr:9630.m03115
TID=OsAffx.12334.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3281411/11heavy metal-associated domain containing protein, expressed
LOC_Os12g329302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32850Os.8250.1.S1_at4/112+19497632..19498475hypothetical protein
LOC_Os02g32860Os.54236.1.S1_at11/112+19503960..19509067WGR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006827biological_processhigh affinity iron ion transport
GO:0006878biological_processcopper ion homeostasis
GO:0007568biological_processaging
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
GO:0016531molecular_functioncopper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12334.2.S1_at--253--3631Chr02:19479622..19479646 (25 bp)
CTTCGAGGCCGTCCTTGAGCGGCAA
LOC_Os02g32814
OsAffx.12334.2.S1_at--577--8371Chr02:19478410..19478434 (25 bp)
GGCGTCCCTGGCGATATCAAGTCTG
LOC_Os02g32814
OsAffx.12334.2.S1_at--984--6491Chr02:19478398..19478422 (25 bp)
GATATCAAGTCTGCGTCGTCGCTGC
LOC_Os02g32814
OsAffx.12334.2.S1_at--290--10091Chr02:19478268..19478292 (25 bp)
TAGGTGGAGCACATGCTGTCAAGAA
LOC_Os02g32814
OsAffx.12334.2.S1_at--74--2372Chr12:19866928..19866952 (25 bp)
AAACCAAGTTCCATCACAATTGAGT
LOC_Os12g32930
OsAffx.12334.2.S1_at--385--2232Chr12:19866913..19866937 (25 bp)
ACAATTGAGTTCTCCCGTGGGAATT
LOC_Os12g32930
OsAffx.12334.2.S1_at--811--351Chr02:19478199..19478223 (25 bp)
ATAAGATTCTATCGTGCCTCTTCTC
LOC_Os02g32814
OsAffx.12334.2.S1_at--679--9191Chr02:19478185..19478209 (25 bp)
TGCCTCTTCTCTACCAGTGATTTGG
LOC_Os02g32814
OsAffx.12334.2.S1_at--163--1291Chr02:19478143..19478167 (25 bp)
AGATGCATCATGAGCTTGCCTCGAG
LOC_Os02g32814
OsAffx.12334.2.S1_at--933--3511Chr02:19478135..19478159 (25 bp)
CATGAGCTTGCCTCGAGAGTTTGAA
LOC_Os02g32814
OsAffx.12334.2.S1_at--365--10571Chr02:19478091..19478115 (25 bp)
TTCTGAATCTGCATACACCTAACCT
LOC_Os02g32814
Target Sequence 
CTTCGAGGCCGTCCTTGAGCGGCAAGGGAGTTGGGCGGCAAGCGGGGGAGGAGCCAGCAATTAAGAAGCGGAACGCGCTC
CGTGTCGCCGGCGTCCCTGGCGATATCAAGTCTGCGTCGTCGCTGCTCTACGTCGCCGACGAGGAGTGCAACCTCCAAGG
CCTCCTCATCATCAAGAAGCTGACGCGCAACCACGACACCTGCAGCAAGATTGGCAACGCAATGTATTTGATAGGTGGAG
CACATGCTGTCAAGAAAAAACCAAGTTCCATCACAATTGAGTTCTCCCGTGGGAATTATAATAAGATTCTATCGTGCCTC
TTCTCTACCAGTGATTTGGAATATCTACAGATAGAAAGATGCATCATGAGCTTGCCTCGAGAGTTTGAAGGTTTTAAGCA
GCTAATTGTTCTGAATCTGCATACACCTAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12334.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis