Browse Element(s) Details


Os.54236.1.S1_at

Description gb:AK102681.1
DB_XREF= gi:32987890
TID=Os.54236.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102J07, full insert sequence.
FL= gb:AK105277.1 gb:AK102681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3286011/11WGR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32850Os.8250.1.S1_at4/112+19497632..19498475hypothetical protein
LOC_Os02g32860Os.54236.1.S1_at11/112+19503960..19509067WGR domain containing protein, expressed
LOC_Os02g32870NANA2+19515861..19518461transposon protein, putative, unclassified
LOC_Os02g32880Os.46692.1.S1_at11/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32880OsAffx.26549.1.S1_at1/112+19519262..19530089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g32890NANA2+19530487..19532073transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006471biological_processprotein amino acid ADP-ribosylation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54236.1.S1_at--673--2051Chr02:19504579..19504603 (25 bp)
ACTTCACCTGGAGGGACGGCGTCAC
LOC_Os02g32860
Os.54236.1.S1_at--611--1611Chr02:19504540..19504564 (25 bp)
AGCTGGTGCCGTCCACGAACAAGGA
LOC_Os02g32860
Os.54236.1.S1_at--1065--5731Chr02:19504517..19504541 (25 bp)
GACGGCCCGCTCGAGTACAACGAGT
LOC_Os02g32860
Os.54236.1.S1_at--787--491Chr02:19504351..19504375 (25 bp)
ATCGCGTTCCTCGTGGGCGTGAAGT
LOC_Os02g32860
Os.54236.1.S1_at--82--4511Chr02:19504243..19504267 (25 bp)
GCCGTTCTGCAGCTTTTTAGCTTAG
LOC_Os02g32860
Os.54236.1.S1_at--630--9871Chr02:19504210..19504234 (25 bp)
TAGCGAATGCATTTTGGGCCCGTGT
LOC_Os02g32860
Os.54236.1.S1_at--278--10411Chr02:19504181..19504205 (25 bp)
TTTTGGGCTGTGTACTTGCTGGAGC
LOC_Os02g32860
Os.54236.1.S1_at--743--7451Chr02:19504112..19504136 (25 bp)
GTGTCCCGTTTTGGGCTTTGCCTTG
LOC_Os02g32860
Os.54236.1.S1_at--78--9551Chr02:19504079..19504103 (25 bp)
TCTTCGTCGTTTGCCGTGCGGGTGT
LOC_Os02g32860
Os.54236.1.S1_at--247--4811Chr02:19504041..19504065 (25 bp)
GCTCTGTAGGCTGAAAGAACCCGTT
LOC_Os02g32860
Os.54236.1.S1_at--998--1431Chr02:19504026..19504050 (25 bp)
AGAACCCGTTGTCGCAGTGTCAAAA
LOC_Os02g32860
Target Sequence 
ACTTCACCTGGAGGGACGGCGTCACGGTGCCGTGCGGCAAGCTGGTGCCGTCCACGAACAAGGACGGCCCGCTCGAGTAC
AACGAGTACGCCGTGTACGACCCCAAGCAGGTGAGCATCGCGTTCCTCGTGGGCGTGAAGTACGAGGAGCAGAACATGGA
GGTGGTGCCGGACGAGTGATCGATCGCCGGCCGGTCACCCGACCGAGGCCGGTGGCGGCCATCTGCCGTTCTGCAGCTTT
TTAGCTTAGAGTAATGGTAGCGAATGCATTTTGGGCCCGTGTCCCATTTTGGGCTGTGTACTTGCTGGAGCCCGGCAGCG
ACGGTGGTGGCTGGTGTGTTCGACGGTGGCAGCCCGTGTCCCGTTTTGGGCTTTGCCTTGTTCTCTTCTCTTCGTCGTTT
GCCGTGCGGGTGTGCAGCGCAGCCACGCTCTGTAGGCTGAAAGAACCCGTTGTCGCAGTGTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis