Browse Element(s) Details


Os.15931.1.S1_x_at

Description gb:AK063708.1
DB_XREF= gi:32973726
TID=Os.15931.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-B07, full insert sequence.
FL= gb:AK063708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3284011/11AN1-like Zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32840Os.15931.1.S1_x_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32840Os.15931.1.S1_at11/112+19482320..19483065AN1-like Zinc finger family protein, expressed
LOC_Os02g32850Os.8250.1.S1_at4/112+19497632..19498475hypothetical protein
LOC_Os02g32860Os.54236.1.S1_at11/112+19503960..19509067WGR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15931.1.S1_x_at--975--4151Chr02:19482554..19482578 (25 bp)
CGCCAAGGCCGGGAGAGTACTGCAC
LOC_Os02g32840
Os.15931.1.S1_x_at--857--2951Chr02:19482558..19482582 (25 bp)
AAGGCCGGGAGAGTACTGCACCCGT
LOC_Os02g32840
Os.15931.1.S1_x_at--486--3971Chr02:19482563..19482587 (25 bp)
CGGGAGAGTACTGCACCCGTCGTCG
LOC_Os02g32840
Os.15931.1.S1_x_at--75--9591Chr02:19482644..19482668 (25 bp)
TCTTGTCCGGCGTTCTTGCCTTCCT
LOC_Os02g32840
Os.15931.1.S1_x_at--447--1831Chr02:19482813..19482837 (25 bp)
ACGCGTGCGGCTTCGACTTCAAGGC
LOC_Os02g32840
Os.15931.1.S1_x_at--69--9731Chr02:19482891..19482915 (25 bp)
TCAAGGACAAGATCTGATCCCTCCC
LOC_Os02g32840
Os.15931.1.S1_x_at--525--2911Chr02:19482893..19482917 (25 bp)
AAGGACAAGATCTGATCCCTCCCCA
LOC_Os02g32840
Os.15931.1.S1_x_at--825--5371Chr02:19482943..19482967 (25 bp)
GAAGAACGCGCGGTTGGATTCCAAA
LOC_Os02g32840
Os.15931.1.S1_x_at--190--4151Chr02:19482949..19482973 (25 bp)
CGCGCGGTTGGATTCCAAATTAAAT
LOC_Os02g32840
Os.15931.1.S1_x_at--1027--10391Chr02:19482981..19483005 (25 bp)
TTATTATGTAAGCTACAGCCGGCCG
LOC_Os02g32840
Os.15931.1.S1_x_at--120--4431Chr02:19483025..19483049 (25 bp)
GCCATGCATGCATGCGACTGAAATG
LOC_Os02g32840
Target Sequence 
CGCCAAGGCCGGGAGAGTACTGCACCCGTCGTCGTCGCCGCCGCAGCCTCGGCCTGCCCGGCTACTCATCCTTCCTCGCC
ATCCTCGTCGTCTTGTCCGGCGTTCTTGCCTTCCTCCACTGCCGCCGAGGCTGGCGTCGTCGTCNCGGCGGTGGCGAAGG
CGAGCAGGTGCGCGAGCTGTAGGAAGCGGGTGGGGCTTACGGGGTTCGCGTGCCGGTGCGGCGGCACGTTCTGCGGCGCA
CACCGGTACCCGGAGCGGCACGCGTGCGGCTTCGACTTCAAGGCCGCCGGCCGCGACGCCATCGCGCGCGCCAACCCGCT
CATCAAGGGCGACAAGCTCAAGGACAAGATCTGATCCCTCCCCACCTGCCGTGCTCCCCGTCGCCGCCGGAAGAACGCGC
GGTTGGATTCCAAATTAAATACGCTTATTATTATGTAAGCTACAGCCGGCCGGNGGTGNAATCGCCAGCCAGCCATGCAT
GCATGCGACTGAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15931.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis