Browse Element(s) Details


OsAffx.26549.1.S1_at

Description tigr:9632.m04882
TID=OsAffx.26549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5019611/11hypothetical protein
LOC_Os02g328801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50164NANA4+29708228..29709802retrotransposon protein, putative, unclassified
LOC_Os04g50168NANA4+29711954..29713625retrotransposon protein, putative, unclassified
LOC_Os04g50172Os.27544.1.A1_at4/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50172OsAffx.10711.1.S1_x_at3/114+29714175..29718815retrotransposon protein, putative, unclassified
LOC_Os04g50176Os.54415.1.S1_at11/114+29719823..29720862expressed protein
LOC_Os04g50180OsAffx.14355.1.S1_at11/114+29722165..29722883hypothetical protein
LOC_Os04g50180OsAffx.11861.1.S1_x_at1/114+29722165..29722883hypothetical protein
LOC_Os04g50184OsAffx.26547.1.S1_at11/114+29725003..29725404hypothetical protein
LOC_Os04g50188OsAffx.26548.1.S1_at11/114+29726865..29727200hypothetical protein
LOC_Os04g50192OsAffx.25036.1.S1_at11/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50192OsAffx.25036.2.S1_at4/114+29727512..29731564retrotransposon protein, putative, LINE subclass
LOC_Os04g50196OsAffx.26549.1.S1_at11/114+29734667..29734984hypothetical protein
LOC_Os04g50200OsAffx.26550.1.S1_at11/114+29739017..29740549F-box protein interaction domain containing protein
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26549.1.S1_at--1097--3951Chr04:29734904..29734928 (25 bp)
CGGAGACGCGAACGCGGTTGCCGGA
LOC_Os04g50196
OsAffx.26549.1.S1_at--1144--4691Chr04:29734810..29734834 (25 bp)
GCGGCGGTGCTGTACCTGGCTCTTT
LOC_Os04g50196
OsAffx.26549.1.S1_at--185--7791Chr04:29734805..29734829 (25 bp)
GGTGCTGTACCTGGCTCTTTTCAGG
LOC_Os04g50196
OsAffx.26549.1.S1_at--38--6991Chr04:29734799..29734823 (25 bp)
GTACCTGGCTCTTTTCAGGTCGCCG
LOC_Os04g50196
OsAffx.26549.1.S1_at--851--10311Chr04:29734787..29734811 (25 bp)
TTTCAGGTCGCCGGCTGGGCTGTTC
LOC_Os04g50196
OsAffx.26549.1.S1_at--807--8331Chr04:29734775..29734799 (25 bp)
GGCTGGGCTGTTCCTCCGGAACAAT
LOC_Os04g50196
OsAffx.26549.1.S1_at--1057--8631Chr04:29734772..29734796 (25 bp)
TGGGCTGTTCCTCCGGAACAATCCC
LOC_Os04g50196
OsAffx.26549.1.S1_at--1083--10571Chr04:29734744..29734768 (25 bp)
TTCTACTCCTACTACATCGTGTTAG
LOC_Os04g50196
OsAffx.26549.1.S1_at--1034--3711Chr04:29734742..29734766 (25 bp)
CTACTCCTACTACATCGTGTTAGTC
LOC_Os04g50196
OsAffx.26549.1.S1_at--1072--9891Chr04:29734735..29734759 (25 bp)
TACTACATCGTGTTAGTCATCGTCG
LOC_Os04g50196
OsAffx.26549.1.S1_at--1048--2092Chr04:29734731..29734755 (25 bp)
ACATCGTGTTAGTCATCGTCGTCAT
LOC_Os04g50196
Target Sequence 
CGGAGACGCGAACGCGGTTGCCGGAATGGTGGAGGCGGGGCAGGACGTCGCGAGGCTTCGCCGCGCGCTGTTCGCCGGCG
GCGTCGGGAAAGCCGCGGCGGTGCTGTACCTGGCTCTTTTCAGGTCGCCGGCTGGGCTGTTCCTCCGGAACAATCCCCTG
TTCTACTCCTACTACATCGTGTTAGTCATCGTCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis