Browse Element(s) Details


OsAffx.25036.2.S1_at

Description tigr:9631.m00939
TID=OsAffx.25036.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1029011/11hypothetical protein
LOC_Os04g068704/11retrotransposon protein, putative, unclassified
LOC_Os04g501924/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10260OsAffx.25035.1.S1_at10/113+5204554..5205453hypothetical protein
LOC_Os03g10270Os.2741.4.S1_x_at2/113+5211963..5212769hypothetical protein
LOC_Os03g10280OsAffx.26548.1.S1_at6/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10280OsAffx.25036.1.S1_at5/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10290OsAffx.25036.2.S1_at11/113+5225318..5228057hypothetical protein
LOC_Os03g10300OsAffx.22964.2.S1_at11/113+5232634..5233873Haemolysin-III related family protein, expressed
LOC_Os03g10310OsAffx.3185.1.S1_x_at10/113+5236249..5238624expressed protein
LOC_Os03g10310OsAffx.3185.1.S1_at10/113+5236249..5238624expressed protein
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25036.2.S1_at--197--2911Chr03:5225494..5225518 (25 bp)
AAGGTATCGCTGATCTCGCCGATGA
LOC_Os03g10290
OsAffx.25036.2.S1_at--720--5312Chr04:3611487..3611511 (25 bp)
GAAGTGGCGGCTTAGCCTTTTGGCT
LOC_Os04g06870
OsAffx.25036.2.S1_at--271--1691Chr03:5225449..5225473 (25 bp)
AGCCTTTTGGCTGCAGCATGGAGCA
LOC_Os03g10290
OsAffx.25036.2.S1_at--543--3232Chr04:3611451..3611475 (25 bp)
CAAGCTGTGCTTGCATGTATCGTCG
LOC_Os04g06870
OsAffx.25036.2.S1_at--241--7333Chr04:3611445..3611469 (25 bp)
GTGCTTGCATGTATCGTCGTCTCCT
LOC_Os04g06870
OsAffx.25036.2.S1_at--72--7173Chr04:29730748..29731041 (25 bp)
GTCTCCTCCATATCATGTTGTCTAC
LOC_Os04g50192
OsAffx.25036.2.S1_at--180--252Chr04:29730743..29730763 (21 bp)
ATATCATGTTGTCTACTCTACCGCA
LOC_Os04g50192
OsAffx.25036.2.S1_at--480--10791Chr03:5225385..5225409 (25 bp)
TTGTCTACTCTACCGCACTGCTATG
LOC_Os03g10290
OsAffx.25036.2.S1_at--90--1991Chr03:5225369..5225393 (25 bp)
ACTGCTATGCTTCTCTTTTGTTGCA
LOC_Os03g10290
OsAffx.25036.2.S1_at--291--10592Chr04:29730705..29730729 (25 bp)
TTCTCTTTTGTTGCACCATGTGGTG
LOC_Os04g50192
OsAffx.25036.2.S1_at--890--9031Chr03:5225348..5225372 (25 bp)
TGCACCATGTGGTGCCCTCGACGCA
LOC_Os03g10290
Target Sequence 
AAGGTATCGCTGATCTCGCCGATGAGGTCGACGAAGTGGCGGCTTAGCCTTTTGGCTGCAGCATGGAGCAAGCTGTGCTT
GCATGTATCGTCGTCTCCTCCATATCATGTTGTCTACTCTACCGCACTGCTATGCTTCTCTTTTGTTGCACCATGTGGTG
CCCTCGACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25036.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis