Browse Element(s) Details


OsAffx.22964.2.S1_at

Description tigr:9631.m00940
TID=OsAffx.22964.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Uncharacterised protein family (Hly-III UPF0073), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1030011/11Haemolysin-III related family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10270Os.2741.4.S1_x_at2/113+5211963..5212769hypothetical protein
LOC_Os03g10280OsAffx.26548.1.S1_at6/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10280OsAffx.25036.1.S1_at5/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10290OsAffx.25036.2.S1_at11/113+5225318..5228057hypothetical protein
LOC_Os03g10300OsAffx.22964.2.S1_at11/113+5232634..5233873Haemolysin-III related family protein, expressed
LOC_Os03g10310OsAffx.3185.1.S1_x_at10/113+5236249..5238624expressed protein
LOC_Os03g10310OsAffx.3185.1.S1_at10/113+5236249..5238624expressed protein
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22964.2.S1_at--540--6611Chr03:5233281..5233305 (25 bp)
GTTGGCCGTTCTACGCGTACCTCTG
LOC_Os03g10300
OsAffx.22964.2.S1_at--971--9111Chr03:5233323..5233347 (25 bp)
TGCTGATGAGCAGCGCGTGCCACCT
LOC_Os03g10300
OsAffx.22964.2.S1_at--296--9351Chr03:5233529..5233553 (25 bp)
TCGCTGATGCCGGTGTTCGAGAAGC
LOC_Os03g10300
OsAffx.22964.2.S1_at--1124--591Chr03:5233535..5233559 (25 bp)
ATGCCGGTGTTCGAGAAGCCCGAGC
LOC_Os03g10300
OsAffx.22964.2.S1_at--538--7331Chr03:5233588..5233612 (25 bp)
GTGCATGGGCATGTCAGGACTCGTT
LOC_Os03g10300
OsAffx.22964.2.S1_at--1002--791Chr03:5233592..5233616 (25 bp)
ATGGGCATGTCAGGACTCGTTCCAA
LOC_Os03g10300
OsAffx.22964.2.S1_at--55--771Chr03:5233598..5233622 (25 bp)
ATGTCAGGACTCGTTCCAATCGTGC
LOC_Os03g10300
OsAffx.22964.2.S1_at--194--8131Chr03:5233604..5233628 (25 bp)
GGACTCGTTCCAATCGTGCACAAGA
LOC_Os03g10300
OsAffx.22964.2.S1_at--516--9391Chr03:5233608..5233632 (25 bp)
TCGTTCCAATCGTGCACAAGATGCT
LOC_Os03g10300
OsAffx.22964.2.S1_at--587--9671Chr03:5233662..5233686 (25 bp)
TCACCACGGGCTACGAGATGGTCAT
LOC_Os03g10300
OsAffx.22964.2.S1_at--480--1831Chr03:5233815..5233839 (25 bp)
ACGCGCACTACCTGGCCGGAGTGGT
LOC_Os03g10300
Target Sequence 
GTTGGCCGTTCTACGCGTACCTCTGCGGCGCCATGTTCTGCCTGCTGATGAGCAGCGCGTGCCACCTGCTGGCCTGCCAC
TCGGAGCACGCCAGCTACGTGCTGCTCCGCCTCGACTACGCCGGCATCACGGGCCTCATCGTCACCTCCTTCTACCCGCT
CGTCTACTACACCTTCCTCTGCGACCCGTTCTTCCGCACGCTCTACCTCGGCTTCATCACGCTCTTCGGCGCCGCCGCGG
TGGCCGTCTCGCTGATGCCGGTGTTCGAGAAGCCCGAGCTGCGGTGGGCGCGCGCCGGCCTGTTCGCGTGCATGGGCATG
TCAGGACTCGTTCCAATCGTGCACAAGATGCTCGTGTTCGGGGCGCGCCCGGAGGCGGTGCTCACCACGGGCTACGAGAT
GGTCATGGGGGCGTTCTACCTCGCCGGCGTGGTGGTGTACGCCACCAGGGTGCCGGAGCGGTGGATGCCGGGGAAGTTCG
ACCTCGCCGGCCACAGCCACCAGCTGTTCCACGTGCTCGTCATCGCCGGCGCCTACGCGCACTACCTGGCCGGAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22964.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis