Browse Element(s) Details


Os.13596.1.S1_at

Description gb:AK066091.1
DB_XREF= gi:32976109
TID=Os.13596.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055M21, full insert sequence.
FL= gb:AK066091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1032010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10280OsAffx.26548.1.S1_at6/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10280OsAffx.25036.1.S1_at5/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10290OsAffx.25036.2.S1_at11/113+5225318..5228057hypothetical protein
LOC_Os03g10300OsAffx.22964.2.S1_at11/113+5232634..5233873Haemolysin-III related family protein, expressed
LOC_Os03g10310OsAffx.3185.1.S1_x_at10/113+5236249..5238624expressed protein
LOC_Os03g10310OsAffx.3185.1.S1_at10/113+5236249..5238624expressed protein
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005874cellular_componentmicrotubule
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13596.1.S1_at--930--8011NONE
GGAGGAGACGAATCCCGCCAAGCCT
NONE
Os.13596.1.S1_at--644--971Chr03:5241728..5241752 (25 bp)
AGGAGGAGTACTCCAGCCGGTCACT
LOC_Os03g10320
Os.13596.1.S1_at--811--3371Chr03:5241741..5241761 (21 bp)
CAGCCGGTCACTCGCAAAGGTCATG
LOC_Os03g10320
Os.13596.1.S1_at--108--9631Chr03:5242314..5242338 (25 bp)
TCATGCGCCAGAGTGACGAGCCGGA
LOC_Os03g10320
Os.13596.1.S1_at--1161--5871Chr03:5242381..5242405 (25 bp)
GAGCGACATTGATGACCACGCCGAC
LOC_Os03g10320
Os.13596.1.S1_at--592--1771Chr03:5242495..5242519 (25 bp)
ACCGGCGCTGCAGAGCATTGCGGAA
LOC_Os03g10320
Os.13596.1.S1_at--1050--4471Chr03:5242560..5242584 (25 bp)
GCCGGCTGCAAGACTTCGTCGTCGA
LOC_Os03g10320
Os.13596.1.S1_at--972--6831Chr03:5242591..5242615 (25 bp)
GTTTCCGAGCACACAGCGTAGTACT
LOC_Os03g10320
Os.13596.1.S1_at--159--2231Chr03:5242640..5242664 (25 bp)
ACAAGTCTCACTGGACGTGTAGCGT
LOC_Os03g10320
Os.13596.1.S1_at--1153--571Chr03:5242707..5242731 (25 bp)
ATCCAGCTGATGCATGTACGTATAC
LOC_Os03g10320
Os.13596.1.S1_at--363--8731Chr03:5242749..5242773 (25 bp)
TGTAACGTGACGGATCGTATACTCC
LOC_Os03g10320
Target Sequence 
GGAGGAGACGAATCCCGCCAAGCCTCGCCGCCGGCGAGGCAGCGGCGGCATCGCGCCAGAGGAGGAGTACTCCAGCCGGT
CACTCGCAAAGGTCATGCGCCAGAGTGACGAGCCGGAGCCCGTGGCGAGGGCGAGCCCGTCCGCCGCGCCGAAGCCGGAG
AGCGACATTGATGACCACGCCGACGGCGAGGCGGCCGAGCCGGACTGCGACCTGGAGGCGCTGCTGCCGCCGCACGGGGT
GGTGTTCGGCCGGCGAGTCGCCCGGCAATGGAGACCGGCGCTGCAGAGCATTGCGGAAGGGTGAGGCCGACCCACTGGCT
CAGGCTGGCCGACGGCGAGCCGGCTGCAAGACTTCGTCGTCGACTCGTCGTTTCCGAGCACACAGCGTAGTACTGCAGTT
GTAGAAAGTGAAGTAGTGACAAGTCTCACTGGACGTGTAGCGTGACAAGTCATGTAGAATAAAGCTACGAGTACCNTTGT
GGATATATCCAGCTGATGCATGTACGTATACTATGGATTGATGATGGGTGTAACGTGACGGATCGTATACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis