Browse Element(s) Details


Os.24748.1.A1_at

Description gb:CB639174
DB_XREF= gi:29634165
DB_XREF=OSJNEa08K15.r
CLONE=OSJNEa08K15
TID=Os.24748.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24748 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564285.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1035011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10300OsAffx.22964.2.S1_at11/113+5232634..5233873Haemolysin-III related family protein, expressed
LOC_Os03g10310OsAffx.3185.1.S1_x_at10/113+5236249..5238624expressed protein
LOC_Os03g10310OsAffx.3185.1.S1_at10/113+5236249..5238624expressed protein
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24748.1.A1_at--1150--2851Chr03:5257152..5257583 (25 bp)
AAGTGCTGCCATGTCAGAGGCCTTA
LOC_Os03g10350
Os.24748.1.A1_at--1067--10191Chr03:5257129..5257153 (25 bp)
TATATTGCAGGCTCAGTCCTTGCAC
LOC_Os03g10350
Os.24748.1.A1_at--904--5691Chr03:5257059..5257083 (25 bp)
GACTATGTCCCAAGCATGGTTTGCA
LOC_Os03g10350
Os.24748.1.A1_at--205--9151Chr03:5256932..5256956 (25 bp)
TGCGCCTTGGACTCGTCTTGAAATC
LOC_Os03g10350
Os.24748.1.A1_at--655--5071Chr03:5256870..5256894 (25 bp)
GCAGCCTACGAGCTCCAGGAGTTAT
LOC_Os03g10350
Os.24748.1.A1_at--823--10111Chr03:5256848..5256872 (25 bp)
TATCGCCGATACAGGACTTCTCAGA
LOC_Os03g10350
Os.24748.1.A1_at--760--2591Chr03:5256797..5256821 (25 bp)
AACGCAATAGCCCAGGATTCCTTGT
LOC_Os03g10350
Os.24748.1.A1_at--1100--2231Chr03:5256770..5256794 (25 bp)
AAATTACCTCTCACTTCTCAAACTG
LOC_Os03g10350
Os.24748.1.A1_at--243--2391Chr03:5256751..5256775 (25 bp)
AAACTGTGGCAACGCATTCTGTAGA
LOC_Os03g10350
Os.24748.1.A1_at--779--2511Chr03:5256698..5256722 (25 bp)
AACTTGCAACTGTGAGCGTCTTTCT
LOC_Os03g10350
Os.24748.1.A1_at--516--10311Chr03:5256678..5256702 (25 bp)
TTTCTGTTGACGTCCTTACCAATTT
LOC_Os03g10350
Target Sequence 
AAGTGCTGCCATGTCAGAGGCCTTATATTGCAGGCTCAGTCCTTGCACCAGGAAGCCCTGACGGCGTTCTCGCTCTCCCT
CTCCATCGATCCAGACTATGTCCCAAGCATGGTTTGCATGGCAGGAATTCTAANCATTCTTGGAGGGAAATCATTGTCGA
TNGCAAGAACGTTCCTCCGTAATGCCCTCCGTTTGGAACCCACAAGCCATCAAGCCTGGCTGCGCCTTGGACTCGTCTTG
AAATCTGAAGGATCACTGCTTGAAGCGGCCGACTGCTTCCAGGCAGCCTACGAGCTCCAGGAGTTATCGCCGATACAGGA
CTTCTCAGAGCACCTCCCCATCATGCTGCAATAGGAACGCAATAGCCCAGGATTCCTTGTAGAAATTACCTCTCACTTCT
CAAACTGTGGCAACGCATTCTGTAGAAATCAGAAATTATGTGGATCTAGTTGCAAACTTGCAACTGTGAGCGTCTTTCTG
TTGACGTCCTTACCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24748.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis