Browse Element(s) Details


Os.54913.1.S1_at

Description gb:AK107086.1
DB_XREF= gi:32992295
TID=Os.54913.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-G06, full insert sequence.
FL= gb:AK107086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1033411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10290OsAffx.25036.2.S1_at11/113+5225318..5228057hypothetical protein
LOC_Os03g10300OsAffx.22964.2.S1_at11/113+5232634..5233873Haemolysin-III related family protein, expressed
LOC_Os03g10310OsAffx.3185.1.S1_x_at10/113+5236249..5238624expressed protein
LOC_Os03g10310OsAffx.3185.1.S1_at10/113+5236249..5238624expressed protein
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54913.1.S1_at--246--4271Chr03:5251169..5251193 (25 bp)
CCTGGACGTATGCTTCTGACGACGA
LOC_Os03g10334
Os.54913.1.S1_at--67--11Chr03:5251205..5251229 (25 bp)
CGAATTACCGAATGCAAAGCCCTGC
LOC_Os03g10334
Os.54913.1.S1_at--1135--2351Chr03:5251220..5251244 (25 bp)
AAAGCCCTGCTAAAATGGCGTGCTC
LOC_Os03g10334
Os.54913.1.S1_at--579--8471Chr03:5251235..5251259 (25 bp)
TGGCGTGCTCGGAGGGAATCTACAC
LOC_Os03g10334
Os.54913.1.S1_at--663--5331Chr03:5251263..5251287 (25 bp)
GACGTACGTGGATGGTCCTTTCTAC
LOC_Os03g10334
Os.54913.1.S1_at--483--10271Chr03:5251281..5251305 (25 bp)
TTTCTACGTCATCGCAGGCTAGACT
LOC_Os03g10334
Os.54913.1.S1_at--482--10031Chr03:5251300..5251324 (25 bp)
TAGACTCTGGTTGGGTAGTACACTT
LOC_Os03g10334
Os.54913.1.S1_at--462--51Chr03:5251331..5251355 (25 bp)
ATTGTAGCTGTCGAGGTGCATGTAT
LOC_Os03g10334
Os.54913.1.S1_at--684--7911Chr03:5251368..5251392 (25 bp)
GGTTGTGTAACTTGTGCGTGACTAT
LOC_Os03g10334
Os.54913.1.S1_at--180--731Chr03:5251393..5251417 (25 bp)
ATGTTGTCTGGCTGGGATGATCGAA
LOC_Os03g10334
Os.54913.1.S1_at--822--1251Chr03:5251420..5251444 (25 bp)
AGATTACTCAAATTCTGCTCCGGTG
LOC_Os03g10334
Target Sequence 
CCTGGACGTATGCTTCTGACGACGAGGAGAGACGATCGAATTACCGAATGCAAAGCCCTGCTAAAATGGCGTGCTCGGAG
GGAATCTACACGACGACGTACGTGGATGGTCCTTTCTACGTCATCGCAGGCTAGACTCTGGTTGGGTAGTACACTTGAAT
AGATTGTAGCTGTCGAGGTGCATGTATAAGTGGACATCTGGTTGTGTAACTTGTGCGTGACTATATGTTGTCTGGCTGGG
ATGATCGAAGAAGATTACTCAAATTCTGCTCCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis