Browse Element(s) Details


Os.9841.1.S1_at

Description gb:AK069273.1
DB_XREF= gi:32979297
TID=Os.9841.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013K23, full insert sequence.
FL= gb:AK069273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1039011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9841.1.S1_at--444--2811Chr03:5275457..5275481 (25 bp)
AAGTTTTACAAGACCTATGCGACGA
LOC_Os03g10390
Os.9841.1.S1_at--969--6091Chr03:5275612..5275636 (25 bp)
GAGTCAGACTCCGTGCAGAACAGCA
LOC_Os03g10390
Os.9841.1.S1_at--477--5411Chr03:5275657..5275681 (25 bp)
GAAGCGTTCATGTGCTACGTGGAGA
LOC_Os03g10390
Os.9841.1.S1_at--627--2931Chr03:5275687..5275711 (25 bp)
AAGGCACTGGTGTCTGAGATGATGA
LOC_Os03g10390
Os.9841.1.S1_at--886--6291Chr03:5275704..5275728 (25 bp)
GATGATGACGAACCTTTCAAGCATT
LOC_Os03g10390
Os.9841.1.S1_at--675--1271Chr03:5275734..5275758 (25 bp)
AGATCTAGTTGCAACCTCGGACGAG
LOC_Os03g10390
Os.9841.1.S1_at--816--4631Chr03:5275879..5275903 (25 bp)
GCGTAGGCCATTTGCCCAGTCATAA
LOC_Os03g10390
Os.9841.1.S1_at--263--8791Chr03:5275933..5275957 (25 bp)
TGTTCAGGACATTCGGGTTCTTTTT
LOC_Os03g10390
Os.9841.1.S1_at--826--3031Chr03:5276012..5276036 (25 bp)
AATCCTCGTAATCGTGTTCACCTGA
LOC_Os03g10390
Os.9841.1.S1_at--211--5671Chr03:5276047..5276071 (25 bp)
GACATCGCGAGAGCTTGAAGTCTTT
LOC_Os03g10390
Os.9841.1.S1_at--875--1691Chr03:5276107..5276131 (25 bp)
AGCCAGCTTTTGCTGGATCTTTCAG
LOC_Os03g10390
Target Sequence 
AAGTTTTACAAGACCTATGCGACGAAGCTTAACGAAGATGAGGTCGAAGGCAGTGAGTCAGACTCCGTGCAGAACAGCAG
TGAGTTGGGCAGCGCTGGAGAAGCGTTCATGTGCTACGTGGAGAAAATGAAGGCACTGGTGTCTGAGATGATGACGAACC
TTTCAAGCATTATGCAAGATCTAGTTGCAACCTCGGACGAGGGCCAGAGCAAGGGGAAGCTGAAGANTNNNNTCCTGGAC
TCCAANGAAAGATTTTGCAAATNGNTCCATNCAGNCCTTNCGTCCTCTTGGCTNATTGCTTCGATNCATGGTNAGTTTTN
ACTTNAAGNNNGNCGCGTAGGCCATTTGCCCAGTCATAATGATAAAATAATAAGGTAGGATTCTTTGGTGTTCAGGACAT
TCGGGTTCTTTTTTNTTGGTCAGATTTTTTTTTCTTCTCAGTTCAACAAGTAGTTGACTGTACGAATGAATCCTCGTAAT
CGTGTTCACCTGATACATTGAGAGACATCGCGAGAGCTTGAAGTCTTTGGTATTGTAAAGTTTTCACTCTCCTTATAATA
TAAAGCCAGCTTTTGCTGGATCTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis