Browse Element(s) Details


Os.52540.1.A1_at

Description gb:AK067825.1
DB_XREF= gi:32977843
TID=Os.52540.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119A09, full insert sequence.
FL= gb:AK067825.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1045011/11yrdC protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10490OsAffx.15996.1.S1_x_at1/113+5321437..5323509retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g10500OsAffx.3187.1.S1_s_at11/113+5324431..5325964adenosine-5'-phosphosulfate kinase, putative
LOC_Os03g10510Os.6631.1.S1_at11/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10510Os.12160.1.S1_at1/113+5327428..5331127Eukaryotic porin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52540.1.A1_at--463--7831Chr03:5300690..5300714 (25 bp)
GGTACCATCAAATACTAGTCCCTTT
LOC_Os03g10450
Os.52540.1.A1_at--222--2031Chr03:5300677..5300701 (25 bp)
ACTAGTCCCTTTGTTATCTATCTGG
LOC_Os03g10450
Os.52540.1.A1_at--304--8791Chr03:5300666..5300690 (25 bp)
TGTTATCTATCTGGCTTCTTGCTTA
LOC_Os03g10450
Os.52540.1.A1_at--716--10551Chr03:5300651..5300675 (25 bp)
TTCTTGCTTAGTTAGGTGCTGTACC
LOC_Os03g10450
Os.52540.1.A1_at--574--271Chr03:5300621..5300645 (25 bp)
ATAGGTTGTTGTTTGTGCTTTTCTT
LOC_Os03g10450
Os.52540.1.A1_at--525--9471Chr03:5300588..5300612 (25 bp)
TCTGAATCAGAAGGTGTCAGCTTCC
LOC_Os03g10450
Os.52540.1.A1_at--397--7111Chr03:5300573..5300597 (25 bp)
GTCAGCTTCCTGTTTCAATGTCAAT
LOC_Os03g10450
Os.52540.1.A1_at--35--7091Chr03:5300554..5300578 (25 bp)
GTCAATGCCCTTACAGTATCACGTG
LOC_Os03g10450
Os.52540.1.A1_at--806--6891Chr03:5300539..5300563 (25 bp)
GTATCACGTGAACTTCGATTGCTAC
LOC_Os03g10450
Os.52540.1.A1_at--718--6591Chr03:5300523..5300547 (25 bp)
GATTGCTACACTACAGTTCATTCTA
LOC_Os03g10450
Os.52540.1.A1_at--839--7851Chr03:5300497..5300521 (25 bp)
GGTAGATTACACTAGCATGCCTATG
LOC_Os03g10450
Target Sequence 
GGTACCATCAAATACTAGTCCCTTTGTTATCTATCTGGCTTCTTGCTTAGTTAGGTGCTGTACCAGAATATAGGTTGTTG
TTTGTGCTTTTCTTTTTCATATTCTGAATCAGAAGGTGTCAGCTTCCTGTTTCAATGTCAATGCCCTTACAGTATCACGT
GAACTTCGATTGCTACACTACAGTTCATTCTATGGTAGATTACACTAGCATGCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52540.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis