Browse Element(s) Details


OsAffx.3187.1.S1_s_at

Description tigr:9631.m00962
TID=OsAffx.3187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=adenylylsulfate kinase, 3 partial, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1050011/11adenosine-5'-phosphosulfate kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10490OsAffx.15996.1.S1_x_at1/113+5321437..5323509retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g10500OsAffx.3187.1.S1_s_at11/113+5324431..5325964adenosine-5'-phosphosulfate kinase, putative
LOC_Os03g10510Os.6631.1.S1_at11/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10510Os.12160.1.S1_at1/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10520Os.24626.1.A1_at10/113+5332059..5336398radical SAM enzyme, Cfr family protein, expressed
LOC_Os03g10530OsAffx.25040.1.S1_at8/113+5346670..5347179hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3187.1.S1_s_at--480--5971Chr03:5324791..5324815 (25 bp)
GAGAAGCCTCTAGTGTCAACCATTG
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--768--2651Chr03:5324788..5324812 (25 bp)
AAGCCTCTAGTGTCAACCATTGGGA
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--96--4471Chr03:5324786..5324810 (25 bp)
GCCTCTAGTGTCAACCATTGGGAAA
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--4--1111Chr03:5324780..5324804 (25 bp)
AGTGTCAACCATTGGGAAATCAACC
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--535--8151Chr03:5324766..5324790 (25 bp)
GGAAATCAACCAATATACTGTGGCA
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--745--9711Chr03:5324761..5324785 (25 bp)
TCAACCAATATACTGTGGCACAATT
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--164--9931Chr03:5324751..5324775 (25 bp)
TACTGTGGCACAATTGCCCAATTGG
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--150--3171Chr03:5324740..5324764 (25 bp)
AATTGCCCAATTGGACAATCTGAGA
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--1069--5591Chr03:5324727..5324751 (25 bp)
GACAATCTGAGAGGCAGAACTTGTT
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--286--2411Chr03:5324697..5324721 (25 bp)
AAAAAGGATGTGTCATTTGGATCAC
LOC_Os03g10500
OsAffx.3187.1.S1_s_at--925--10811Chr03:5324681..5324705 (25 bp)
TTGGATCACAGGACTCAGCGGCTCA
LOC_Os03g10500
Target Sequence 
GAGAAGCCTCTAGTGTCAACCATTGGGAAATCAACCAATATACTGTGGCACAATTGCCCAATTGGACAATCTGAGAGGCA
GAACTTGTTGGGGCAAAAAGGATGTGTCATTTGGATCACAGGACTCAGCGGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3187.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis