Browse Element(s) Details


Os.24626.1.A1_at

Description gb:AK071317.1
DB_XREF= gi:32981340
TID=Os.24626.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084C07, full insert sequence.
FL= gb:AK071317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1052010/11radical SAM enzyme, Cfr family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10490OsAffx.15996.1.S1_x_at1/113+5321437..5323509retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g10500OsAffx.3187.1.S1_s_at11/113+5324431..5325964adenosine-5'-phosphosulfate kinase, putative
LOC_Os03g10510Os.6631.1.S1_at11/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10510Os.12160.1.S1_at1/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10520Os.24626.1.A1_at10/113+5332059..5336398radical SAM enzyme, Cfr family protein, expressed
LOC_Os03g10530OsAffx.25040.1.S1_at8/113+5346670..5347179hypothetical protein
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10550OsAffx.12809.1.S1_at9/113+5359417..5360291hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24626.1.A1_at--26--311Chr03:5332547..5332571 (25 bp)
ATACCATTCAATCCCATTGGCTCAT
LOC_Os03g10520
Os.24626.1.A1_at--462--9651Chr03:5332450..5332474 (25 bp)
TCAGAACCACTATTCGCCAGCAAAT
LOC_Os03g10520
Os.24626.1.A1_at--394--8631Chr03:5332426..5332450 (25 bp)
TGGGTCAAGACATAGCTGGCGCCTG
LOC_Os03g10520
Os.24626.1.A1_at--910--10071Chr03:5332393..5332417 (25 bp)
TAGTGGTTAGCCTCCCCGATGAAAG
LOC_Os03g10520
Os.24626.1.A1_at--692--2331Chr03:5332372..5332396 (25 bp)
AAAGATCAGCGGGTGGTGCCACCCT
LOC_Os03g10520
Os.24626.1.A1_at--1115--7731Chr03:5332222..5332246 (25 bp)
GGTGTGTTTCCCTTCATATTTGGGA
LOC_Os03g10520
Os.24626.1.A1_at--1135--2291Chr03:5332168..5332192 (25 bp)
AAAGGCCCCAGCTTTTGTGTATAGG
LOC_Os03g10520
Os.24626.1.A1_at--385--10111Chr03:5332149..5332173 (25 bp)
TATAGGCAACTATCTACGCGAAAGT
LOC_Os03g10520
Os.24626.1.A1_at--434--7071Chr03:5332093..5332117 (25 bp)
GTAATGTTATCTCAGCAACCCATCC
LOC_Os03g10520
Os.24626.1.A1_at--497--3251Chr03:5332078..5332102 (25 bp)
CAACCCATCCTTGCAATGAACTGTG
LOC_Os03g10520
Os.24626.1.A1_at--85--1971Chr03:5332059..5332083 (25 bp)
ACTGTGAAAAATCGCTTTGCCTTGC
NONE
Target Sequence 
ATACCATTCAATCCCATTGGCTCATCAAACAATTTCAAGACTAGCAGCGAACATAATGTGAAGAAGTTCCAGAAGATCCT
AAGAGGAATTTACAACATCAGAACCACTATTCGCCAGCAAATGGGTCAAGACATAGCTGGCGCCTGTGGCCAGCTAGTGG
TTAGCCTCCCCGATGAAAGATCAGCGGGTGGTGCCACCCTTCTCTCAGACATTGAAGACATCAGGATCTGACCTCATCAA
AGATGAAATCCTCACAAGATACCTGTAACTAGCATTATAGTTTCAATGCAGGTTTAAAATATGGAAAGTTGATTTTGGCC
GGTGTGGTGTGTTTCCCTTCATATTTGGGAGGCACAATTTTGTTTGCTACACATTGGCAAAAGGCCCCAGCTTTTGTGTA
TAGGCAACTATCTACGCGAAAGTNTGCGCAACAAACCCTGTTATTGTAGATGGGGTAATGTTATCTCAGCAACCCATCCT
TGCAATGAACTGTGAAAAATCGCTTTGCCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24626.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis