Browse Element(s) Details


OsAffx.12809.1.S1_at

Description tigr:9631.m00970
TID=OsAffx.12809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g105509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10520Os.24626.1.A1_at10/113+5332059..5336398radical SAM enzyme, Cfr family protein, expressed
LOC_Os03g10530OsAffx.25040.1.S1_at8/113+5346670..5347179hypothetical protein
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10550OsAffx.12809.1.S1_at9/113+5359417..5360291hypothetical protein
LOC_Os03g10570OsAffx.20947.1.S1_x_at2/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570Os.9810.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570OsAffx.20947.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10580NANA3+5370007..5372163meiotic asynaptic mutant 1, putative
LOC_Os03g10590Os.16689.1.S1_at11/113+5373048..5376102somatic embryogenesis related protein, putative, expressed
LOC_Os03g10600Os.24224.1.A1_at11/113+5380075..5385984expressed protein
LOC_Os03g10600OsAffx.3190.1.S1_at2/113+5380075..5385984expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12809.1.S1_at--868--2831Chr03:5360095..5360119 (25 bp)
AAGTACGGAACATCCAGCCCATGAG
LOC_Os03g10550
OsAffx.12809.1.S1_at--320--5911NONE
GAGCTCGTTGGGTTACTCGAACTGA
NONE
OsAffx.12809.1.S1_at--1010--8971Chr03:5360026..5360050 (25 bp)
TGAACATTCCCCAGTTGCTGATTCA
LOC_Os03g10550
OsAffx.12809.1.S1_at--741--6451Chr03:5359988..5360012 (25 bp)
GATCAACGCCGAGAGATGCTACTGG
LOC_Os03g10550
OsAffx.12809.1.S1_at--313--1031Chr03:5359924..5359948 (25 bp)
AGGTACTCGCTCAAGACCTGATCGA
LOC_Os03g10550
OsAffx.12809.1.S1_at--271--9351Chr03:5359865..5359889 (25 bp)
TCGAGGGAGATGTCTGCGACCACTC
LOC_Os03g10550
OsAffx.12809.1.S1_at--639--5851Chr03:5359848..5359872 (25 bp)
GACCACTCTCAAGTCCAGGCTGGAG
LOC_Os03g10550
OsAffx.12809.1.S1_at--765--7731Chr03:5359806..5359830 (25 bp)
GGTGAACACCCTTCTTAACAATTCG
LOC_Os03g10550
OsAffx.12809.1.S1_at--887--4071Chr05:24943534..24943561 (23 bp)
CGAGACACTTGTTCGCCAGGGAGGA
NONE
OsAffx.12809.1.S1_at--1015--8091Chr03:5359677..5359701 (25 bp)
GGACCATCTGCCACCTACAATAGGA
LOC_Os03g10550
OsAffx.12809.1.S1_at--1027--2671Chr03:5359639..5359663 (25 bp)
AAGCGATCGCCCTCATCAGAAACAT
LOC_Os03g10550
Target Sequence 
AAGTACGGAACATCCAGCCCATGAGCGATCTCTCCGAGCTCGTTGGGTTACTCGAACTGATGAAGTGGGTGAACATTCCC
CAGTTGCTGATTCACCTCTGCAACCTCGATCAACGCCGAGAGATGCTACTGGCGTTAGGGGGGTTCCAGGTCAGGGGATC
ACTCTCCGTGCAGGTACTCGCTCAAGACCTGATCGACCGAGTTCCTGCCTCAAATCCTCGTGCGCATTGGTCGAGGGAGA
TGTCTGCGACCACTCTCAAGTCCAGGCTGGAGGAAGCAACTGCCACCGCGGTGAACACCCTTCTTAACAATTCGATCCGC
GCCGAGACACTTGTTCGCCAGGGAGGAGGCACCGTGATGGCACGAGTTCGTGAGCTTCGGCGACTCCTGCGCCAAATTTC
CAACGCAGTTCTCGCCGCGGACCATCTGCCACCTACAATAGGATCAGACTTGGAGCAAGCGATCGCCCTCATCAGAAACA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis