Browse Element(s) Details


OsAffx.25040.1.S1_at

Description tigr:9631.m00965
TID=OsAffx.25040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g105308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10490OsAffx.15996.1.S1_x_at1/113+5321437..5323509retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g10500OsAffx.3187.1.S1_s_at11/113+5324431..5325964adenosine-5'-phosphosulfate kinase, putative
LOC_Os03g10510Os.6631.1.S1_at11/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10510Os.12160.1.S1_at1/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10520Os.24626.1.A1_at10/113+5332059..5336398radical SAM enzyme, Cfr family protein, expressed
LOC_Os03g10530OsAffx.25040.1.S1_at8/113+5346670..5347179hypothetical protein
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10550OsAffx.12809.1.S1_at9/113+5359417..5360291hypothetical protein
LOC_Os03g10570OsAffx.20947.1.S1_x_at2/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570Os.9810.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570OsAffx.20947.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10580NANA3+5370007..5372163meiotic asynaptic mutant 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25040.1.S1_at--879--1751Chr03:5347082..5347106 (25 bp)
ACCGGTCCCAGATCAACGTCATCGT
LOC_Os03g10530
OsAffx.25040.1.S1_at--587--3491NONE
CATGGCGGCCATACTGAGGCACGTG
NONE
OsAffx.25040.1.S1_at--164--931NONE
AGGCACGTGAGCGAGGCCTACCAGT
NONE
OsAffx.25040.1.S1_at--570--5831Chr03:5346948..5346972 (25 bp)
GACCTGTACGTCATCGTCAACCGCA
LOC_Os03g10530
OsAffx.25040.1.S1_at--413--4131Chr03:5346927..5346951 (25 bp)
CGCATCGCAGAGGTGAACTTGCCAA
LOC_Os03g10530
OsAffx.25040.1.S1_at--1095--7351Chr03:5346915..5346939 (25 bp)
GTGAACTTGCCAAGGATCAGGTCAG
LOC_Os03g10530
OsAffx.25040.1.S1_at--294--411Chr03:5346900..5346924 (25 bp)
ATCAGGTCAGACGTGCGCGATGCCC
LOC_Os03g10530
OsAffx.25040.1.S1_at--301--8391Chr03:5346849..5346873 (25 bp)
GGCGCTACCATCATCGAGCTCGCTG
LOC_Os03g10530
OsAffx.25040.1.S1_at--572--8311Chr03:5346776..5346800 (25 bp)
GGCTCAACCGACTTGCTGACCACAT
LOC_Os03g10530
OsAffx.25040.1.S1_at--229--1111NONE
AGTGTCTCCTCGATGACTTCGCATC
NONE
OsAffx.25040.1.S1_at--167--8951Chr03:5346706..5346730 (25 bp)
TGACTTCGCATCAGTCATCCTGAAC
LOC_Os03g10530
Target Sequence 
ACCGGTCCCAGATCAACGTCATCGTCTCCTCGTGCACCTTCGGCGACGCCGTCGCCATGGCGGCCATACTGAGGCACGTG
AGCGAGGCCTACCAGTGGCGCGTCGCCAACTTCACCAGGCTGCGTGCCCTCGCCGACCTGTACGTCATCGTCAACCGCAT
CGCAGAGGTGAACTTGCCAAGGATCAGGTCAGACGTGCGCGATGCCCAGGCCGTGGCTCTCCTTCGTGGACGCGGCGCTA
CCATCATCGAGCTCGCTGGCGAGATCGGGGGGCCATCCGTCGACATCTTCGCCGCCTTCGTGCTCCGGCTCAACCGACTT
GCTGACCACATCGGGGACCGACTTCGTTCGGTGAGGGCGCGGCAGTGTCTCCTCGATGACTTCGCATCAGTCATCCTGAA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis