Browse Element(s) Details


Os.6631.1.S1_at

Description gb:AK121020.1
DB_XREF= gi:37990643
TID=Os.6631.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 24162 porin-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049E21, full insert sequence.
FL= gb:AY224468.1 gb:AK121020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1051011/11Eukaryotic porin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10490OsAffx.15996.1.S1_x_at1/113+5321437..5323509retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g10500OsAffx.3187.1.S1_s_at11/113+5324431..5325964adenosine-5'-phosphosulfate kinase, putative
LOC_Os03g10510Os.6631.1.S1_at11/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10510Os.12160.1.S1_at1/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10520Os.24626.1.A1_at10/113+5332059..5336398radical SAM enzyme, Cfr family protein, expressed
LOC_Os03g10530OsAffx.25040.1.S1_at8/113+5346670..5347179hypothetical protein
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6631.1.S1_at--362--8811Chr03:5327944..5327968 (25 bp)
TGTTGCTGAATTAACCCGCAGGCTC
LOC_Os03g10510
Os.6631.1.S1_at--910--5971Chr03:5327910..5327934 (25 bp)
GAGAACACTCTCACTGTTGGTGGCC
LOC_Os03g10510
Os.6631.1.S1_at--16--8611Chr03:5327893..5327917 (25 bp)
TGGTGGCCTGTACAAGGTTGACCCC
LOC_Os03g10510
Os.6631.1.S1_at--220--7911Chr03:5327878..5327902 (25 bp)
GGTTGACCCCGAGACAGCTGTGAAG
LOC_Os03g10510
Os.6631.1.S1_at--535--3831Chr03:5327825..5327849 (25 bp)
CTGCTCTTCTCCAGCATGAGGTTAA
LOC_Os03g10510
Os.6631.1.S1_at--818--7191Chr03:5327794..5327818 (25 bp)
GTCGGTTTTGACAATCTCTGGTGAA
LOC_Os03g10510
Os.6631.1.S1_at--602--2831Chr03:5327739..5327763 (25 bp)
AAGTTTGGTCTAGCGCTTGCACTCA
LOC_Os03g10510
Os.6631.1.S1_at--280--891Chr03:5327715..5327739 (25 bp)
AGGCCCTGATAACATCGTCTGTGGT
LOC_Os03g10510
Os.6631.1.S1_at--317--3191Chr03:5327641..5327665 (25 bp)
CAATAATTTGTTCCGCAGACCTGTT
LOC_Os03g10510
Os.6631.1.S1_at--178--8831Chr03:5327559..5327583 (25 bp)
TGATTTTATCCGCTACTTCTGTTGA
LOC_Os03g10510
Os.6631.1.S1_at--100--8791Chr03:5327503..5327527 (25 bp)
TGTTTTCCTCTCTTTCTTAGCTTAA
LOC_Os03g10510
Target Sequence 
TGTTGCTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTTGGTGGCCTGTACAAGGTTGACCCCGAGA
CAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTG
ACAATCTCTGGTGAATTCGACACCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATA
ACATCGTCTGTGGTTGATGGCTGTTAAATTTCGAATTCTTTGGTTGTTTTGCAAAGCAATGGCCAATAATTTGTTCCGCA
GACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTA
CTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis