Browse Element(s) Details


OsAffx.25039.1.S1_at

Description tigr:9631.m00959
TID=OsAffx.25039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g104787/111,4-beta-xylanase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10490OsAffx.15996.1.S1_x_at1/113+5321437..5323509retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g10500OsAffx.3187.1.S1_s_at11/113+5324431..5325964adenosine-5'-phosphosulfate kinase, putative
LOC_Os03g10510Os.6631.1.S1_at11/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10510Os.12160.1.S1_at1/113+5327428..5331127Eukaryotic porin family protein, expressed
LOC_Os03g10520Os.24626.1.A1_at10/113+5332059..5336398radical SAM enzyme, Cfr family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25039.1.S1_at--970--8291NONE
GGCTTCTGGCATGGCGCAACCGCTT
NONE
OsAffx.25039.1.S1_at--364--8471NONE
TGGCGCAACCGCTTGCTTACGACTA
NONE
OsAffx.25039.1.S1_at--362--4131Chr03:5314630..5314654 (25 bp)
CGCTTGCTTACGACTACTCGTCAAG
LOC_Os03g10478
OsAffx.25039.1.S1_at--663--10471Chr03:5314623..5314647 (25 bp)
TTACGACTACTCGTCAAGCTCTGAG
LOC_Os03g10478
OsAffx.25039.1.S1_at--237--5711Chr03:5314623..5314643 (21 bp)
GACTACTCGTCAAGCTCTGAGTTGG
LOC_Os03g10478
OsAffx.25039.1.S1_at--457--3751NONE
CTCGTCAAGCTCTGAGTTGGTTGGT
NONE
OsAffx.25039.1.S1_at--191--3251NONE
CAAGCTCTGAGTTGGTTGGTGAAGA
NONE
OsAffx.25039.1.S1_at--803--5351Chr03:5313326..5313350 (25 bp)
GAAGATGTTGTCTGTGTTGTCCTCT
LOC_Os03g10478
OsAffx.25039.1.S1_at--574--731Chr03:5313322..5313346 (25 bp)
ATGTTGTCTGTGTTGTCCTCTGTTC
LOC_Os03g10478
OsAffx.25039.1.S1_at--944--8671Chr03:5313314..5313338 (25 bp)
TGTGTTGTCCTCTGTTCTGACTGTC
LOC_Os03g10478
OsAffx.25039.1.S1_at--55--7271Chr03:5313308..5313332 (25 bp)
GTCCTCTGTTCTGACTGTCTCATCA
LOC_Os03g10478
Target Sequence 
GGCTTCTGGCATGGCGCAACCGCTTGCTTACGACTACTCGTCAAGCTCTGAGTTGGTTGGTGAAGATGTTGTCTGTGTTG
TCCTCTGTTCTGACTGTCTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis