Browse Element(s) Details


OsAffx.20052.2.S1_at

Description tigr:9631.m00954
TID=OsAffx.20052.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1043011/11hypothetical protein
LOC_Os12g403501/11F-box domain containing protein
LOC_Os12g403601/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20052.2.S1_at--133--6151Chr03:5289273..5289297 (25 bp)
GAGGTGCTCGTGTGCGCACGGGCCG
LOC_Os03g10430
OsAffx.20052.2.S1_at--331--5091Chr03:5289288..5289312 (25 bp)
GCACGGGCCGTCTCCATCGATCGAT
LOC_Os03g10430
OsAffx.20052.2.S1_at--618--9172Chr03:5289924..5289948 (25 bp)
TGCCCGCTTGCTCAACCAATTTGAT
LOC_Os03g10430
OsAffx.20052.2.S1_at--1093--4913Chr10:15140072..15140095 (24 bp)
GCTTGCTCAACCAATTTGATTAACA
NONE
OsAffx.20052.2.S1_at--592--6554Chr03:5289946..5289970 (25 bp)
GATTAACACCAATTCTGAATCTCTG
LOC_Os03g10430
OsAffx.20052.2.S1_at--227--9473Chr03:5289357..5289381 (25 bp)
TCTGAATCTCTGATCATGCAAGCGC
LOC_Os03g10430
OsAffx.20052.2.S1_at--138--9511Chr03:5289363..5289387 (25 bp)
TCTCTGATCATGCAAGCGCAGGCTG
LOC_Os03g10430
OsAffx.20052.2.S1_at--443--9291Chr03:5289502..5289526 (25 bp)
TCCCACGTTTAAAATCACTGAAAAT
LOC_Os03g10430
OsAffx.20052.2.S1_at--237--1971Chr03:5289518..5289897 (25 bp)
ACTGAAAATCCTGAGATGCGATGAC
LOC_Os03g10430
OsAffx.20052.2.S1_at--630--4031Chr03:5289897..5290176 (25 bp)
CGTTACAGATATGGATTGGCTATTT
LOC_Os03g10430
OsAffx.20052.2.S1_at--169--7931Chr03:5290164..5290188 (25 bp)
GGATTGGCTATTTACTATTGGGCAA
LOC_Os03g10430
Target Sequence 
GAGGTGCTCGTGTGCGCACGGGCCGTCTCCATCGATCGATCGATCAACCTGCCCGCTTGCTCAACCAATTTGATTAACAC
CAATTCTGAATCTCTGATCATGCAAGCGCAGGCTGGGATGGTGGAGCAGCCTCCACAGATCCGTTCTGTCAGGCATCTTG
GCTTACGGGTGAACTACACAGCGATGGTCCACATGTTGCCCCGCCAGATAGAGCAGATCCTGAAGAGTTTCCCACGTTTA
AAATCACTGAAAATCCTGAGATGCGATGACGTTACAGATATGGATTGGCTATTTACTATTGGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20052.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis