Browse Element(s) Details


Os.51177.1.S1_at

Description gb:AK061311.1
DB_XREF= gi:32971329
TID=Os.51177.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B01, full insert sequence.
FL= gb:AK061311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g104302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51177.1.S1_at--455--7551Chr10:15139596..15139620 (25 bp)
GTGGCCTTCATTGTCGATAGTCTCA
NONE
Os.51177.1.S1_at--1052--2012Chr10:15140189..15140213 (25 bp)
ACTACACAGCGATGGCATCAATTTG
NONE
Os.51177.1.S1_at--127--10732Chr10:15140211..15140235 (25 bp)
TTGCAGTTGACGTGAACAATCGGAT
NONE
Os.51177.1.S1_at--6--9812Chr10:15140366..15140387 (22 bp)
TAAAAGGCTAGCATTATCCAATCTG
NONE
Os.51177.1.S1_at--35--4671NONE
GCGTGCTTTATATGGTGAGCTCCCA
NONE
Os.51177.1.S1_at--1069--7751Chr10:15141422..15141446 (25 bp)
GGTGAGCTCCCAGATTTATGAAACT
NONE
Os.51177.1.S1_at--49--2891Chr10:15141470..15141494 (25 bp)
AAGGGACATTTATTTTCAGCAGAAA
NONE
Os.51177.1.S1_at--866--3091Chr10:15141539..15141563 (25 bp)
AATATCTGATGATGCTCTCGTTTCA
NONE
Os.51177.1.S1_at--381--3131Chr10:15141669..15141693 (25 bp)
AATTATTCAGGTTTACAGGCTGTTA
NONE
Os.51177.1.S1_at--995--3051Chr10:15141712..15141736 (25 bp)
AATCTTTTTATTTGCCAGTTTCTCA
NONE
Os.51177.1.S1_at--984--6831Chr10:15141729..15141753 (25 bp)
GTTTCTCAAAAAACTCTGGCCAGAA
NONE
Target Sequence 
GTGGCCTTCATTGTCGATAGTCTCATCTCAAAAGATCATGCAAGCACAGGCTGGGATGGTGGAGCAGCCTCCACAGATCC
GTTCTGTCAGGCATCTTGGCTTACGGGTGAACTACACAGCGATGGCATCAATTTGCAGTTGACGTGAACAATCGGATAAA
AGGCTAGCATTATCCAATCTGCTGCTTTGACTGCATGGCGTGCTTTATATGGTGAGCTCCCAGATTTATGAAACTATCAG
TAGCACAACTAGAAAGGAAAGGGACATTTATTTTCAGCAGAAAGAGAAAGGATAGAGGAAGTACGTACAGTCGAATGTGA
TGAATGAAATATCTGATGATGCTCTCGTTTCAGCTGTGATGAATGAAATATCTGATGGCAGGTGATTTTAATTTAGGGAT
TCGGTTCAACCTTTTTCTTTTACATTTTCTTTTACAATTTGTAGTTTGTAGAGCCTAAATTATTCAGGTTTACAGGCTGT
TATGTTTGTTTAGATAAGACAATCTTTTTATTTGCCAGTTTCTCAAAAAACTCTGGCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis