Browse Element(s) Details


OsAffx.25038.1.S1_at

Description tigr:9631.m00955
TID=OsAffx.25038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 10, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1044011/11Glycosyl hydrolase family 10 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein
LOC_Os03g10440OsAffx.25038.1.S1_at11/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10440OsAffx.28351.1.S1_at1/113+5296680..5299763Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10450Os.52540.1.A1_at11/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10450Os.52197.1.S1_at2/113+5300449..5303083yrdC protein, putative, expressed
LOC_Os03g10460Os.49596.1.S1_at11/113+5303750..5306872expressed protein
LOC_Os03g10469Os.50461.2.S1_at11/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10469Os.50461.1.S1_at10/113+5305828..5309705Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g10478OsAffx.25039.1.S1_at7/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10478Os.22699.1.S1_at2/113+5310426..53148591,4-beta-xylanase, putative, expressed
LOC_Os03g10490OsAffx.15996.1.S1_x_at1/113+5321437..5323509retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g10500OsAffx.3187.1.S1_s_at11/113+5324431..5325964adenosine-5'-phosphosulfate kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25038.1.S1_at--378--4091Chr03:5299165..5299189 (25 bp)
CGACGCTCATGTTCATGAACGAGTA
LOC_Os03g10440
OsAffx.25038.1.S1_at--743--3931Chr03:5299228..5299252 (25 bp)
CGGCGAGGTACGTGCAGCGGCTGAA
LOC_Os03g10440
OsAffx.25038.1.S1_at--1045--1511Chr03:5299252..5299276 (25 bp)
AGCAGATCATCGGCGGGTACCCGCA
LOC_Os03g10440
OsAffx.25038.1.S1_at--270--3491Chr03:5299422..5299446 (25 bp)
CAGGCGTACTACCTGGAGGAGATCC
LOC_Os03g10440
OsAffx.25038.1.S1_at--300--3931Chr03:5299503..5299527 (25 bp)
CGGCCGCAGGGCTGCTACGTCATGT
LOC_Os03g10440
OsAffx.25038.1.S1_at--708--4751Chr03:5299513..5299537 (25 bp)
GCTGCTACGTCATGTGCCTCACCGA
LOC_Os03g10440
OsAffx.25038.1.S1_at--73--5831Chr03:5299575..5299599 (25 bp)
GACCGCCTCATCACCGAGTGGAGCA
LOC_Os03g10440
OsAffx.25038.1.S1_at--350--3751Chr03:5299581..5299605 (25 bp)
CTCATCACCGAGTGGAGCACGGCGC
LOC_Os03g10440
OsAffx.25038.1.S1_at--483--4071Chr03:5299628..5299652 (25 bp)
CGAGGGCTTCTTCCAGGCCGAGCTC
LOC_Os03g10440
OsAffx.25038.1.S1_at--531--4251Chr03:5299702..5299726 (25 bp)
CCGTGTCGCAGAGCGTCAAGGTTGA
LOC_Os03g10440
OsAffx.25038.1.S1_at--895--8671Chr03:5299705..5299729 (25 bp)
TGTCGCAGAGCGTCAAGGTTGAAAT
LOC_Os03g10440
Target Sequence 
CGACGCTCATGTTCATGAACGAGTACAACACGCTGGAGCAGCCGGGCGACATGGCGGCGCTGCCGGCGAGGTACGTGCAG
CGGCTGAAGCAGATCATCGGCGGGTACCCGCAGAACGGCGCCGGCATGGCCATCGGCCTCGAGGGCCACTTCACCGCGCC
GGTCAACATCCCCTACATGCGCGCCGCCCTGGACACCCTCGCGCAGGCCGGCGTCCCCGTGTGGCTCACCGAGGTCGACG
TCGGCGGCGGCGCGTCGCAGGCGTACTACCTGGAGGAGATCCTCCGGGAGGCGTACGCGCACCCGGCGGTGCAGGGCGTC
ATCCTGTGGGCGGCGTGGCGGCCGCAGGGCTGCTACGTCATGTGCCTCACCGACAACGACTTCAACAACCTGCCGCAGGG
CGACGTCGTCGACCGCCTCATCACCGAGTGGAGCACGGCGCCGCGCGCCGGCACGACGGACGCCGAGGGCTTCTTCCAGG
CCGAGCTCGCGCACGGCGAGTACAAGGTCACCGTCACCCACCCGTCGCTCAACACCTCCGTGTCGCAGAGCGTCAAGGTT
GAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis