Browse Element(s) Details


Os.24224.1.A1_at

Description gb:AK102234.1
DB_XREF= gi:32987443
TID=Os.24224.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088B05, full insert sequence.
FL= gb:AK102234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1060011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10550OsAffx.12809.1.S1_at9/113+5359417..5360291hypothetical protein
LOC_Os03g10570OsAffx.20947.1.S1_x_at2/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570Os.9810.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570OsAffx.20947.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10580NANA3+5370007..5372163meiotic asynaptic mutant 1, putative
LOC_Os03g10590Os.16689.1.S1_at11/113+5373048..5376102somatic embryogenesis related protein, putative, expressed
LOC_Os03g10600Os.24224.1.A1_at11/113+5380075..5385984expressed protein
LOC_Os03g10600OsAffx.3190.1.S1_at2/113+5380075..5385984expressed protein
LOC_Os03g10610Os.11595.1.S2_at2/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.13325.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_x_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10620Os.11186.1.S1_at11/113+5401321..5405247hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g10630OsAffx.12810.1.S1_at9/113+5410221..5411099hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24224.1.A1_at--244--8851Chr03:5385216..5385240 (25 bp)
TGATCTTCAACTGCTCCACACATAT
LOC_Os03g10600
Os.24224.1.A1_at--810--2551Chr03:5385224..5385247 (24 bp)
AACTGCTCCACACATATCTGGGTGA
LOC_Os03g10600
Os.24224.1.A1_at--343--251Chr03:5385237..5385385 (25 bp)
ATATCTGGGTGAGGGTCCATGCCGA
LOC_Os03g10600
Os.24224.1.A1_at--400--9791Chr03:5385504..5385528 (25 bp)
TAAGATATCCAATGCATCATCTGCA
LOC_Os03g10600
Os.24224.1.A1_at--844--411Chr03:5385519..5385543 (25 bp)
ATCATCTGCATGATCTTGGGTTTGT
LOC_Os03g10600
Os.24224.1.A1_at--402--6431Chr03:5385530..5385554 (25 bp)
GATCTTGGGTTTGTGCTGTACTATT
LOC_Os03g10600
Os.24224.1.A1_at--949--4731Chr03:5385544..5385568 (25 bp)
GCTGTACTATTAATTGCTGACTGCT
LOC_Os03g10600
Os.24224.1.A1_at--854--371Chr03:5385825..5385849 (25 bp)
ATCACAACTTGGTAATCTCTAGCAC
LOC_Os03g10600
Os.24224.1.A1_at--612--9732Chr03:5385903..5385927 (25 bp)
TAATTCTTTTGGAAGGTAGTTCAAT
LOC_Os03g10600
Os.24224.1.A1_at--158--5731Chr03:5385930..5385954 (25 bp)
GACTGATCCTATCCAGGCCATACTC
LOC_Os03g10600
Os.24224.1.A1_at--978--3691Chr03:5385938..5385962 (25 bp)
CTATCCAGGCCATACTCCATATTAC
LOC_Os03g10600
Target Sequence 
TGATCTTCAACTGCTCCACACATATCTGGGTGAGGGTCCATGCCGAACAACTTTTGCAAATCTGGTGCAGGACTACAAAT
TACACTTCCAGTATCAGGGCAAAATCTAGTCAAACTTGCTAAAGGCTTTTTGGAGCATTTGATGTTGATCCGTCTTATTC
TGCATAAGATATCCAATGCATCATCTGCATGATCTTGGGTTTGTGCTGTACTATTAATTGCTGACTGCTTANNNNNNNNA
NNNNNNNNNNNNAGNNNGGAAAGGGAATATGGCTGTTNCTGAAGATTTAAAGCTCATCAAATTAATNTGCTGGATTTGGA
ACAAGATGAAAAGNAGCAANCAAGAAAATGAGCTTAGTAATCAAGNTGAGAAGGACTTGGTGATCTGCAGCCTTTGGCTC
TTGTTCCATAAATCACAACTTGGTAATCTCTAGCACNTAGTGTTCATATTCTGGGGTAATATTTAACACNCTTGCCCCCC
AAACTAAACTAATTCTTTTGGAAGGTAGTTCAATCNGACTGATCCTATCCAGGCCATACTCCATATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24224.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis