Browse Element(s) Details


Os.11595.1.S2_at

Description gb:AK065434.1
DB_XREF= gi:32975452
TID=Os.11595.1
CNT=37
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.11595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1070A12.13 (B1070A12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022N21, full insert sequence.
FL= gb:AK065434.1 gb:AK109546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5759911/11retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g636107/11retrotransposon protein, putative, unclassified
LOC_Os05g251403/11retrotransposon protein, putative, unclassified
LOC_Os03g106102/11retrotransposon protein, putative, unclassified
LOC_Os05g422801/11expressed protein
LOC_Os09g221001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57590OsAffx.23826.1.S1_at11/111+33627675..33629510hypothetical protein
LOC_Os01g57599Os.11595.1.S2_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57599Os.11595.1.S1_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57610Os.36449.1.S1_at11/111+33635296..33637781Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os01g57620Os.28605.1.S1_at11/111+33643891..33644760expressed protein
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11595.1.S2_at--428--5995Chr09:13381530..13381549 (20 bp)
GAGACTATCCAACATCTGTTCATTG
LOC_Os09g22100
Os.11595.1.S2_at--171--108511Chr11:24809474..24809498 (25 bp)
TTGGTTTATATATTCCTACTAGCAT
NONE
Os.11595.1.S2_at--206--8836Chr02:33518379..33518403 (25 bp)
TGATTGGCTTCAGGGAGTCATAAAC
NONE
Os.11595.1.S2_at--821--2391Chr01:33630949..33630973 (25 bp)
AAACTAATACTTGCTGGAGCTTCTG
LOC_Os01g57599
Os.11595.1.S2_at--1064--10594Chr02:33518433..33518455 (23 bp)
TTCTGCCTTGTGTTGGGCACTGTAA
NONE
Os.11595.1.S2_at--220--2311Chr11:24809664..24809688 (25 bp)
ATATTGGCTTCGTCTGTGGGCACAG
NONE
Os.11595.1.S2_at--647--6538Chr05:24605909..24605933 (25 bp)
GATTTCTTAATTGTTGCATGTCGTA
NONE
Os.11595.1.S2_at--1024--2574Chr02:33518610..33518634 (25 bp)
AACGACGGTTATGCAACTGTTTGCC
NONE
Os.11595.1.S2_at--391--37114Chr11:24809844..24809863 (20 bp)
CTAGTTTGGTTGGTGTGTTTGCTTC
NONE
Os.11595.1.S2_at--760--6855Chr02:33518698..33518722 (25 bp)
GTTTGCTTCTATTTGAACTTCACTC
NONE
Os.11595.1.S2_at--280--7014Chr06:26822810..26822834 (25 bp)
GTAAAGGTCGGGATGCTATTTCATT
NONE
Target Sequence 
GAGACTATCCAACATCTGTTCATTGATTGTCATTTTACAAAGTTTATTTGGAGGGCAGTTCAGTTTTCTTTTGGTTTATA
TATTCCTACTAGCATATCTCATATTTTTTATGATTGGCTTCAGGGAGTCATAAACAAAAAGAGCAAACTAATACTTGCTG
GAGCTTCTGCCTTGTGTTGGGCACTGTAACTGAGTAGGAATGATAGGGTTTTTGACAAATCACCTACTATTACTTATATG
CAGGTCATTTTCAAGGCAACATATTGGCTTCGTCTGTGGGCACAGTTACAAAAGTGTGATGAAGATACAGATTTCTTAAT
TGTTGCATGTCGTAAGGTTGAAACGACGGTTATGCAACTGTTTGCCAATCATGGATGGAGATTTACCAATAGACTGGAAT
AATGTTATTTTGTCTAGTTTGGTTGGTGTGTTTGCTTCTATTTGAACTTCACTCTTACAGAGTGCTAGTTTGTAATAATT
GGCTGTAGCTCTTTTGAGTAAAGGTCGGGATGCTATTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11595.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis