Browse Element(s) Details


Os.36449.1.S1_at

Description gb:AK063368.1
DB_XREF= gi:32973386
TID=Os.36449.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative auxin-responsive GH3 (B1070A12.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D12, full insert sequence.
FL= gb:AK063368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5761011/11Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57590OsAffx.23826.1.S1_at11/111+33627675..33629510hypothetical protein
LOC_Os01g57599Os.11595.1.S2_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57599Os.11595.1.S1_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57610Os.36449.1.S1_at11/111+33635296..33637781Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os01g57620Os.28605.1.S1_at11/111+33643891..33644760expressed protein
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed
LOC_Os01g57650Os.37921.2.S1_at11/111+33656401..33658783zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36449.1.S1_at--966--8791Chr01:33637202..33637226 (25 bp)
TGTTCGAGGAGTGCTGCCTGTCCGT
LOC_Os01g57610
Os.36449.1.S1_at--158--4271Chr01:33637218..33637242 (25 bp)
CCTGTCCGTGGAGGAGGCACTGAAC
LOC_Os01g57610
Os.36449.1.S1_at--515--8971Chr01:33637238..33637262 (25 bp)
TGAACAGCGTCTACCGGCAGGGCCG
LOC_Os01g57610
Os.36449.1.S1_at--474--8071Chr01:33637463..33637487 (25 bp)
GGAGCCCCGGGAACAAGCAATGGAA
LOC_Os01g57610
Os.36449.1.S1_at--138--491Chr01:33637499..33637523 (25 bp)
ATCTGGTCGGCAAGGGAGACGCCTA
LOC_Os01g57610
Os.36449.1.S1_at--738--6391Chr01:33637550..33637574 (25 bp)
GATCGAGTATTTGTGTGAGCTGGTA
LOC_Os01g57610
Os.36449.1.S1_at--822--10831Chr01:33637603..33637627 (25 bp)
TTGGTCGATATGTTTCTTTAGGGAT
LOC_Os01g57610
Os.36449.1.S1_at--897--6851Chr01:33637640..33637664 (25 bp)
GTTTGAATTATCTCTGATGCTGCGA
LOC_Os01g57610
Os.36449.1.S1_at--670--8891Chr01:33637681..33637705 (25 bp)
TGAGATGACGACTTAGCCTATATGA
LOC_Os01g57610
Os.36449.1.S1_at--1085--711Chr01:33637702..33637726 (25 bp)
ATGATCATTTGCTTTACTCTTTCTC
LOC_Os01g57610
Os.36449.1.S1_at--994--1191Chr01:33637738..33637762 (25 bp)
AGTATATGTTATTTCCTCCGTCTCA
LOC_Os01g57610
Target Sequence 
TGTTCGAGGAGTGCTGCCTGTCCGTGGAGGAGGCACTGAACAGCGTCTACCGGCAGGGCCGCGCGTGCGACAGGTCCATC
GGCCCGCTCGAGATACGCGTCGTGGCGGAGGGCACCTTCGACAAGCTCATGGACTACGCGATCAGCCGGGGCGCGTCCAT
CAACCAGTACAAGGCGCCGCGGTGCGTGCGCCCTGGCCCGGTCGTCGAGCTGCTCGACGCGAGGGTGCAGGGCAAGTACT
TCAGTCCCAAGTGCCCCAAGTGGAGCCCCGGGAACAAGCAATGGAACAAAAGCAAGGATCTGGTCGGCAAGGGAGACGCC
TAATATTGAAGCTAGAGGGTGATGATCTGATCGAGTATTTGTGTGAGCTGGTAATTAATTAACGGTACATGCATATGGTC
ATTGGTCGATATGTTTCTTTAGGGATATGATAATTCATGTTTGAATTATCTCTGATGCTGCGAGAGGATCGAATAGTTAT
GAGATGACGACTTAGCCTATATGATCATTTGCTTTACTCTTTCTCTGCTGTAACGCAGTATATGTTATTTCCTCCGTCTC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis