Browse Element(s) Details


Os.39003.1.S1_s_at

Description gb:AU183769
DB_XREF= gi:14191558
DB_XREF=AU183769
CLONE=E31734
TID=Os.39003.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39003 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_195193.1 (A.thaliana) Putative S-phase-specific ribosomal protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1034011/1140S ribosomal protein S3a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10300OsAffx.22964.2.S1_at11/113+5232634..5233873Haemolysin-III related family protein, expressed
LOC_Os03g10310OsAffx.3185.1.S1_x_at10/113+5236249..5238624expressed protein
LOC_Os03g10310OsAffx.3185.1.S1_at10/113+5236249..5238624expressed protein
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39003.1.S1_s_at--558--3171Chr03:5255792..5255816 (25 bp)
AATTGAGAAGGCGACATCCAGTATT
LOC_Os03g10340
Os.39003.1.S1_s_at--32--8911Chr03:5255795..5255819 (25 bp)
TGAGAAGGCGACATCCAGTATTTTC
LOC_Os03g10340
Os.39003.1.S1_s_at--771--831Chr03:5255979..5255999 (21 bp)
ATGGAGGTGCATGGTGACTATGCCA
LOC_Os03g10340
Os.39003.1.S1_s_at--895--1031Chr03:5255979..5256003 (25 bp)
AGGTGCATGGTGACTATGCCAAGGA
LOC_Os03g10340
Os.39003.1.S1_s_at--534--9051Chr03:5255982..5256006 (25 bp)
TGCATGGTGACTATGCCAAGGAGGA
LOC_Os03g10340
Os.39003.1.S1_s_at--476--3671Chr03:5256089..5256113 (25 bp)
CTTATTTTGCTGCCCGTTTATTTAG
LOC_Os03g10340
Os.39003.1.S1_s_at--9--3231Chr03:5256118..5256142 (25 bp)
CAAGTAAACAGCTATCTAGTTGTGG
LOC_Os03g10340
Os.39003.1.S1_s_at--136--9431Chr03:5256144..5256168 (25 bp)
TCGTGAACATCCTAGCCTGTGTCAA
LOC_Os03g10340
Os.39003.1.S1_s_at--1104--7351Chr03:5256146..5256170 (25 bp)
GTGAACATCCTAGCCTGTGTCAATG
LOC_Os03g10340
Os.39003.1.S1_s_at--421--5491Chr03:5256148..5256172 (25 bp)
GAACATCCTAGCCTGTGTCAATGGC
LOC_Os03g10340
Os.39003.1.S1_s_at--986--2491Chr03:5256149..5256173 (25 bp)
AACATCCTAGCCTGTGTCAATGGCA
LOC_Os03g10340
Target Sequence 
AATTGAGAAGGCGACATCCAGTATTTTCCCCCTTCAGAATGTGTTTGTCCGCAAAGTGAANATTNTAAAGGCCCCGAAAT
TTGACCTGGGGAAGCTCATGGAGGTGCATGGTGACTATGCCAAGGAGGACATCGGTACGAAGCTTNATAGGCCTGCAAAA
AATTAGGCCATGGCCGGGCAGGAGGTCGCTGCTGCCGAGTANANATTATCCCTTATTTTGCTGCCCGTTTATTTAGNCAN
CAAGTAAACAGCTATCTAGTTGTGGNTCGTGAACATCCTAGCCTGTGTCAATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39003.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis