Browse Element(s) Details


OsAffx.3185.1.S1_x_at

Description tigr:9631.m00941
TID=OsAffx.3185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1031010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10270Os.2741.4.S1_x_at2/113+5211963..5212769hypothetical protein
LOC_Os03g10280OsAffx.26548.1.S1_at6/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10280OsAffx.25036.1.S1_at5/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10290OsAffx.25036.2.S1_at11/113+5225318..5228057hypothetical protein
LOC_Os03g10300OsAffx.22964.2.S1_at11/113+5232634..5233873Haemolysin-III related family protein, expressed
LOC_Os03g10310OsAffx.3185.1.S1_x_at10/113+5236249..5238624expressed protein
LOC_Os03g10310OsAffx.3185.1.S1_at10/113+5236249..5238624expressed protein
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3185.1.S1_x_at--1007--1571Chr03:5237991..5238015 (25 bp)
AGCTCGAGGTCTCGGTATCTGACCA
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--199--1031Chr03:5237997..5238021 (25 bp)
AGGTCTCGGTATCTGACCACTCCGT
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--653--4131NONE
CCTCTGAACCAAGGGTTACAGAAGA
NONE
OsAffx.3185.1.S1_x_at--212--7671Chr03:5238335..5238359 (25 bp)
GGGATTACGCCACTGAGTGTGACAT
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--980--6551Chr03:5238337..5238361 (25 bp)
GATTACGCCACTGAGTGTGACATTA
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--1007--1791Chr03:5238341..5238365 (25 bp)
ACGCCACTGAGTGTGACATTAGTTT
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--358--4371Chr03:5238344..5238368 (25 bp)
CCACTGAGTGTGACATTAGTTTCCT
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--306--10431Chr03:5238359..5238383 (25 bp)
TTAGTTTCCTCGGACAACGGCGACG
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--314--891Chr03:5238396..5238420 (25 bp)
AGGCCGCCGTCGTTATCCATGGCAG
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--872--4491Chr03:5238401..5238425 (25 bp)
GCCGTCGTTATCCATGGCAGCTGGT
LOC_Os03g10310
OsAffx.3185.1.S1_x_at--316--4251Chr03:5238402..5238426 (25 bp)
CCGTCGTTATCCATGGCAGCTGGTG
LOC_Os03g10310
Target Sequence 
AGCTCGAGGTCTCGGTATCTGACCACTCCGTCCGCCTAGCGGCCGCCGCCGCAGCTTACTCCTCCAGTTGCAGCGCCGCC
GGCACCGCTCTGAGTAATGTCCGCGGCTGCCTCGCTGCCCTGAATGCCTCCACCTCTGAACCAAGGGTTACAGAAGAGGT
GGAGGTTGGGAGCGAGGAGATGTTGTTTGAGCAACTTACTTCTCTGGCGAAAGAGGTGGCGATAGTGGAGTTGGTCAGGG
ATTACGCCACTGAGTGTGACATTAGTTTCCTCGGACAACGGCGACGGGGAGAGCAAGGAGGCCGCCGTCGTTATCCATGG
CAGCTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3185.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis