Browse Element(s) Details


Os.9390.1.S1_at

Description gb:AK100984.1
DB_XREF= gi:32986193
TID=Os.9390.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145D01, full insert sequence.
FL= gb:AK100984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3275011/11Glycosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32710OsAffx.2833.1.S1_at11/112+19425060..19426795hypothetical protein
LOC_Os02g32720NANA2+19427742..19428566hypothetical protein
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein
LOC_Os02g32814Os.12520.1.S1_a_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.12334.2.S1_at11/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.16759.1.A1_at3/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.55390.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28943.1.A1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.22659.1.S1_x_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814Os.9332.2.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed
LOC_Os02g32814OsAffx.28971.1.S1_at1/112+19466361..19480380heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9390.1.S1_at--833--1631Chr02:19446221..19446245 (25 bp)
AGCGGTGGCCATTCGTGACTCATTT
LOC_Os02g32750
Os.9390.1.S1_at--1001--8931Chr02:19446206..19446230 (25 bp)
TGACTCATTTTGTCGGGTGCAAGCC
LOC_Os02g32750
Os.9390.1.S1_at--1053--831Chr02:19446135..19446159 (25 bp)
ATGGAGCGAGCATTTAATTTTGCCG
LOC_Os02g32750
Os.9390.1.S1_at--317--3131Chr02:19446120..19446144 (25 bp)
AATTTTGCCGATAACCAGGTGCTGC
LOC_Os02g32750
Os.9390.1.S1_at--996--931Chr02:19446042..19446066 (25 bp)
AGGAATCAGACCACAAAGCCTATTG
LOC_Os02g32750
Os.9390.1.S1_at--50--7351Chr02:19445997..19446021 (25 bp)
GTGAAGGCCAAGATATCGACCACTT
LOC_Os02g32750
Os.9390.1.S1_at--1149--291Chr02:19445940..19445964 (25 bp)
ATAGCATACTTGCTTTGGCTCTCTT
LOC_Os02g32750
Os.9390.1.S1_at--860--9071Chr02:19445930..19445954 (25 bp)
TGCTTTGGCTCTCTTCAAGGTCAGA
LOC_Os02g32750
Os.9390.1.S1_at--552--291Chr02:19445752..19445776 (25 bp)
ATAGACTTGCCTTTTATACTGCGTT
LOC_Os02g32750
Os.9390.1.S1_at--1018--9911Chr02:19445736..19445760 (25 bp)
TACTGCGTTACATCTCAATGCTACT
LOC_Os02g32750
Os.9390.1.S1_at--537--4851Chr02:19445717..19445741 (25 bp)
GCTACTATGCTAGCTTCTAGTGCAA
LOC_Os02g32750
Target Sequence 
AGCGGTGGCCATTCGTGACTCATTTTGTCGGGTGCAAGCCATGTGGAAGCTATGGGGATTATCCTGTGGAGCGGTGTNTC
AGGAGTATGGAGCGAGCATTTAATTTTGCCGATAACCAGGTGCTGCGGCTNTATGGGTTTGCTCACAAGGGGCTCGAAAG
CCCCAAGATCAAGAGGGTCAGGAATCAGACCACAAAGCCTATTGATGACAAGGAGAATCTTGATGTGAAGGCCAAGATAT
CGACCACTTCTTGAAAAGTCCTGATGAGAGTTGGTATGGCAATAGCATACTTGCTTTGGCTCTCTTCAAGGTCAGAGCAT
TTTGTGACTTGGGGATGGTGTTGTTTTATTTTCCACTCTTTTTTTCTATTCTTTTTGTTCATGGAATTGTTATTGTTATG
TAACAGTTAGAGGTTGCAATCTAATGTTTATCATGGAGTTAAATGTGATAGGGGCTCAAATCAGCAGAAATAGACTTGCC
TTTTATACTGCGTTACATCTCAATGCTACTATGCTAGCTTCTAGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis