Browse Element(s) Details


Os.51815.2.S1_x_at

Description gb:AK063839.1
DB_XREF= gi:32973857
TID=Os.51815.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B11, full insert sequence.
FL= gb:AK063839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed
LOC_Os02g32620OsAffx.24541.1.S1_at11/112+19336159..19337868D-mannose binding lectin family protein, expressed
LOC_Os02g32630OsAffx.12318.1.S1_at11/112+19339869..19340318hypothetical protein
LOC_Os02g32640NANA2+19344451..19345297NA
LOC_Os02g32650Os.51815.1.S1_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_x_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_at9/112+19346710..19349026expressed protein
LOC_Os02g32660Os.6796.1.S1_a_at11/112+19349894..193612591,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os02g32670OsAffx.24542.1.S1_x_at9/112+19369601..19379945expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51815.2.S1_x_at--215--5971Chr02:19348680..19348704 (25 bp)
GAGAAGGTGTTCTCCATGCTCGGCC
LOC_Os02g32650
Os.51815.2.S1_x_at--761--4831Chr02:19348467..19348491 (25 bp)
GCATCGACAAGGTGAACCGCCAGCT
LOC_Os02g32650
Os.51815.2.S1_x_at--800--10031Chr02:19346952..19346976 (25 bp)
TAGAGTCCCTCTACTAGACTTGGGC
LOC_Os02g32650
Os.51815.2.S1_x_at--34--871Chr02:19346915..19346939 (25 bp)
ATGGCTGCCACCACAAAGAGCTTGT
LOC_Os02g32650
Os.51815.2.S1_x_at--112--5871Chr02:19346848..19346872 (25 bp)
GAGCCAAATTTGTGTGACCTCACAT
LOC_Os02g32650
Os.51815.2.S1_x_at--445--9691Chr02:19346829..19346853 (25 bp)
TCACATGTGTCGTCGCGTTTGATAT
LOC_Os02g32650
Os.51815.2.S1_x_at--294--7671Chr02:19346797..19346821 (25 bp)
GGGATCACGAGTTTATCTATTCTGT
LOC_Os02g32650
Os.51815.2.S1_x_at--303--6751Chr02:19346769..19346793 (25 bp)
GTTCAGTTTAATTGCAACGTCATTG
LOC_Os02g32650
Os.51815.2.S1_x_at--544--7131Chr02:19346751..19346775 (25 bp)
GTCATTGTCAAGAGAAATCCTTTTT
LOC_Os02g32650
Os.51815.2.S1_x_at--912--10171Chr02:19346726..19346750 (25 bp)
TTTCCCAATTAGAGGGCTCGAAACA
LOC_Os02g32650
Os.51815.2.S1_x_at--666--8311Chr02:19346712..19346736 (25 bp)
GGCTCGAAACAGGATTAATTTGGCA
LOC_Os02g32650
Target Sequence 
GAGAAGGTGTTCTCCATGCTCGGCCGGGTCGAGGAGGAGACCAAGCGCCTCGCCTTCATCCGCCAGGAGCTGGAGGTGAT
GTCGGATCCGACGCGGCGGGAGGTGGAGACGATACGGAAGCGCATCGACAAGGTGAACCGCCAGCTCAAGCCGCTCGGCA
AGAACTGCCTCAAGAAGGAGAAGGAATACAAGGCGTGCCTAGAGGCTTACAACGAGAAGAGCAACGAGAAAGCAACGCTT
GTGAACAGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGA
GTCCCTCTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTT
TTTTTTTTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCAC
GAGTTTATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAATCCTTTTTTTTCCCAATTAGAGGGC
TCGAAACAGGATTAATTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51815.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis