Browse Element(s) Details


Os.51815.2.S1_at

Description gb:AK063839.1
DB_XREF= gi:32973857
TID=Os.51815.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51815 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B11, full insert sequence.
FL= gb:AK063839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g326509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed
LOC_Os02g32620OsAffx.24541.1.S1_at11/112+19336159..19337868D-mannose binding lectin family protein, expressed
LOC_Os02g32630OsAffx.12318.1.S1_at11/112+19339869..19340318hypothetical protein
LOC_Os02g32640NANA2+19344451..19345297NA
LOC_Os02g32650Os.51815.1.S1_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_x_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_at9/112+19346710..19349026expressed protein
LOC_Os02g32660Os.6796.1.S1_a_at11/112+19349894..193612591,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os02g32670OsAffx.24542.1.S1_x_at9/112+19369601..19379945expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51815.2.S1_at--390--1011NONE
AGGTTGATGGAGCTTGTGGGCGAGA
NONE
Os.51815.2.S1_at--302--6751Chr02:19346769..19346793 (25 bp)
GTTCAGTTTAATTGCAACGTCATTG
LOC_Os02g32650
Os.51815.2.S1_at--76--3451Chr02:19346766..19346790 (25 bp)
CAGTTTAATTGCAACGTCATTGTCA
LOC_Os02g32650
Os.51815.2.S1_at--538--6831Chr02:19346764..19346788 (25 bp)
GTTTAATTGCAACGTCATTGTCAAG
LOC_Os02g32650
Os.51815.2.S1_at--71--3171Chr02:19346760..19346784 (25 bp)
AATTGCAACGTCATTGTCAAGAGAA
LOC_Os02g32650
Os.51815.2.S1_at--1075--5131Chr02:19346756..19346780 (25 bp)
GCAACGTCATTGTCAAGAGAAATCC
LOC_Os02g32650
Os.51815.2.S1_at--543--7131Chr02:19346751..19346775 (25 bp)
GTCATTGTCAAGAGAAATCCTTTTT
LOC_Os02g32650
Os.51815.2.S1_at--913--10171Chr02:19346726..19346750 (25 bp)
TTTCCCAATTAGAGGGCTCGAAACA
LOC_Os02g32650
Os.51815.2.S1_at--114--151Chr02:19346719..19346743 (25 bp)
ATTAGAGGGCTCGAAACAGGATTAA
LOC_Os02g32650
Os.51815.2.S1_at--1119--5991Chr02:19346715..19346739 (25 bp)
GAGGGCTCGAAACAGGATTAATTTG
LOC_Os02g32650
Os.51815.2.S1_at--455--3751Chr02:19346710..19346734 (25 bp)
CTCGAAACAGGATTAATTTGGCAGC
NONE
Target Sequence 
AGGTTGATGGAGCTTGTGGGCGAGAGCGAGCAGCTGCGGATGAAGAAGCTCGAAGAGCTGAACAAAACGGTAGAGTCCCT
CTACTAGACTTGGGCTTTTGGGGGCCCATGGCTGCCACCACAAAGAGCTTGTTTGCAGTGTGCAATTTCTTCTTTTTTTT
TTATGACACGAGGATGAGCCAAATTTGTGTGACCTCACATGTGTCGTCGCGTTTGATATAGCTGATGGGATCACGAGTTT
ATCTATTCTGTATGGTTCAGTTTAATTGCAACGTCATTGTCAAGAGAAATCCTTTTTTTTCCCAATTAGAGGGCTCGAAA
CAGGATTAATTTGGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51815.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis