Browse Element(s) Details


Os.13735.1.S1_at

Description gb:AK071199.1
DB_XREF= gi:32981222
TID=Os.13735.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083N21, full insert sequence.
FL= gb:AK071199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g581508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13735.1.S1_at--259--8591Chr02:35583210..35583234 (25 bp)
TGGTAAATTAAGCTGCACCTGTACT
LOC_Os02g58150
Os.13735.1.S1_at--1114--7811Chr02:35583211..35583235 (25 bp)
GGTAAATTAAGCTGCACCTGTACTG
LOC_Os02g58150
Os.13735.1.S1_at--18--7051Chr02:35583212..35583236 (25 bp)
GTAAATTAAGCTGCACCTGTACTGT
LOC_Os02g58150
Os.13735.1.S1_at--437--9831Chr02:35583213..35583237 (25 bp)
TAAATTAAGCTGCACCTGTACTGTA
LOC_Os02g58150
Os.13735.1.S1_at--434--2251Chr02:35583214..35583238 (25 bp)
AAATTAAGCTGCACCTGTACTGTAC
LOC_Os02g58150
Os.13735.1.S1_at--381--2091Chr02:35583247..35583271 (25 bp)
ACATCACCTGATAATTGCTGTATCC
LOC_Os02g58150
Os.13735.1.S1_at--309--3371Chr02:35583251..35583275 (25 bp)
CACCTGATAATTGCTGTATCCTCTC
LOC_Os02g58150
Os.13735.1.S1_at--1106--8831Chr02:35583255..35583279 (25 bp)
TGATAATTGCTGTATCCTCTCCATC
LOC_Os02g58150
Target Sequence 
TGGTAAATTAAGCTGCACCTGTACTGTACATGTCATAACATCACCTGATAATTGCTGTATCCTCTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis