Browse Element(s) Details


Os.52638.1.S1_at

Description gb:AK068455.1
DB_XREF= gi:32978473
TID=Os.52638.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152B13, full insert sequence.
FL= gb:AK068455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5812010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52638.1.S1_at--842--2251NONE
AAATTTGCAGCTGGCCAATTCAATG
NONE
Os.52638.1.S1_at--748--9731Chr02:35562837..35562861 (25 bp)
TCAATGCTGGACTATGACCCTTCAT
LOC_Os02g58120
Os.52638.1.S1_at--869--8931Chr02:35562823..35562847 (25 bp)
TGACCCTTCATATGATTCTGATCAA
LOC_Os02g58120
Os.52638.1.S1_at--138--2711Chr02:35562800..35562824 (25 bp)
AAGCTTCTGGTGTGATGCCTTCATC
LOC_Os02g58120
Os.52638.1.S1_at--869--8551Chr02:35562616..35562640 (25 bp)
TGGATGTATTACTCAACTGTCTTAC
LOC_Os02g58120
Os.52638.1.S1_at--1023--9791Chr02:35562225..35562610 (25 bp)
TAAGCTCAGAGCACTTGGGCATCAA
LOC_Os02g58120
Os.52638.1.S1_at--1118--3191Chr02:35562092..35562116 (25 bp)
CAATGGTCATGTGAGGGAGGCCTTC
LOC_Os02g58120
Os.52638.1.S1_at--237--8011Chr02:35562077..35562101 (25 bp)
GGAGGCCTTCATATGTACTCCAGGC
LOC_Os02g58120
Os.52638.1.S1_at--178--7931Chr02:35562046..35562070 (25 bp)
GGATTCTCCGGCCTATAGTGGCAAG
LOC_Os02g58120
Os.52638.1.S1_at--430--5731Chr02:35561988..35562012 (25 bp)
GACTGACCAAGATTAGTGTGCCTAG
LOC_Os02g58120
Os.52638.1.S1_at--759--10771Chr02:35561962..35561986 (25 bp)
TTGATCTTGTGCTCGTGTGTGTAAA
LOC_Os02g58120
Target Sequence 
AAATTTGCAGCTGGCCAATTCAATGCTGGACTATGACCCTTCATATGATTCTGATCAAGCTTCTGGTGTGATGCCTTCAT
CTTTCCATGATATCAGTGATGTCGAATTCCAAGACAATTGGGGCAGAGTTTGGGTGGATCTTGGAACATCGGATTATCTT
GGATTGGATGTATTACTCAACTGTCTTACACAATTAAGCTCAGAGCACTTGGGCATCAAACAAGTGGTATTTGGTGGCAA
AAAAATGGGCGACTGGGAAGAGGGGATGAAGAACTCTGATTACGGATACAGGCATTTCAAGATATAGCTGTACCGAGGAG
TGATATGCAATGGTCATGTGAGGGAGGCCTTCATATGTACTCCAGGCCTCTGGGGATTCTCCGGCCTATAGTGGCAAGAC
TTTTCACTTGAAGCAGAGAAATTTTTTGGACGACTGACCAAGATTAGTGTGCCTAGATTGATCTTGTGCTCGTGTGTGTA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis