Browse Element(s) Details


Os.49282.1.S1_x_at

Description gb:AK099911.1
DB_XREF= gi:32985120
TID=Os.49282.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116D13, full insert sequence.
FL= gb:AK099911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5813911/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0008233molecular_functionpeptidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49282.1.S1_x_at--285--3151Chr02:35567039..35567063 (25 bp)
AATTCAGTGCTTGCTGGACTGCTGA
LOC_Os02g58139
Os.49282.1.S1_x_at--89--8131Chr02:35567024..35567048 (25 bp)
GGACTGCTGATCTTCTGCAGGCTTT
LOC_Os02g58139
Os.49282.1.S1_x_at--1137--8011Chr02:35566999..35567023 (25 bp)
GGAGGATTATTTGCCTCTGCTCTTC
LOC_Os02g58139
Os.49282.1.S1_x_at--1012--4811Chr02:35566981..35567005 (25 bp)
GCTCTTCTCAGCCTAGTCAAAGATG
LOC_Os02g58139
Os.49282.1.S1_x_at--1156--1291Chr02:35566961..35566985 (25 bp)
AGATGATAACCTGATTTCCCCTTCT
LOC_Os02g58139
Os.49282.1.S1_x_at--851--3031Chr02:35566917..35566941 (25 bp)
AATCCAGGAGATTTGTGTCAGTCGA
LOC_Os02g58139
Os.49282.1.S1_x_at--357--7251Chr02:35566816..35566840 (25 bp)
GTCCGCGTGCACCTATATTGTTGCA
LOC_Os02g58139
Os.49282.1.S1_x_at--611--6431Chr02:35566751..35566776 (25 bp)
GATCATCTTTTGTCTTGTGTACCGT
LOC_Os02g58139
Os.49282.1.S1_x_at--712--8671Chr02:35566736..35566760 (25 bp)
TGTGTACCGTCAATGCCCAGTGCTT
LOC_Os02g58139
Os.49282.1.S1_x_at--920--9571Chr02:35566690..35566714 (25 bp)
TCTTGGACACGTGACGGCTATGCTG
LOC_Os02g58139
Os.49282.1.S1_x_at--387--4871Chr02:35566674..35566698 (25 bp)
GCTATGCTGCATTCGTCCGAAGCAA
LOC_Os02g58139
Target Sequence 
AATTCAGTGCTTGCTGGACTGCTGATCTTCTGCAGGCTTTGGAGGATTATTTGCCTCTGCTCTTCTCAGCCTAGTCAAAG
ATGATAACCTGATTTCCCCTTCTTTTTAATTGGTCTGAATGAAATCCAGGAGATTTGTGTCAGTCGAGGTTGAATTCTTT
TACAGGGAGCGAGTTGGAAGATAGTACAATTTTGCATTTATGAACGAAGAGGATGATGCAGAGGTCCGCGTGCACCTATA
TTGTTGCATGTGGTGTAGGACAATAGGAGTGATACTGTACTGTGTTTGATCATCTTTTGTCTTGTGTACCGTCAATGCCC
AGTGCTTAGAATGAGATGCTACCTGTTGTCTTGGACACGTGACGGCTATGCTGCATTCGTCCGAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49282.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis