Browse Element(s) Details


OsAffx.25311.1.A1_at

Description tigr:9631.m03051
TID=OsAffx.25311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g581701/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein
LOC_Os02g58189NANA2+35610995..35611354NA
LOC_Os02g58200Os.23006.1.S1_at11/112+35615876..35616367expressed protein
LOC_Os02g58210Os.18195.1.S1_at11/112+35618268..35624929jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25311.1.A1_at--537--10311Chr03:17673870..17673894 (25 bp)
TTTCTCGTACGAATTGAAGCCCATA
NONE
OsAffx.25311.1.A1_at--824--3151Chr03:17673859..17673883 (25 bp)
AATTGAAGCCCATACGAGAGTGATT
NONE
OsAffx.25311.1.A1_at--232--1671Chr03:17673853..17673877 (25 bp)
AGCCCATACGAGAGTGATTACACAT
NONE
OsAffx.25311.1.A1_at--1111--6012Chr01:5546524..5546548 (25 bp)
GAGAGTGATTACACATGATTTTACA
NONE
OsAffx.25311.1.A1_at--54--2171Chr03:17673822..17673846 (25 bp)
ACACGCATAAACACCACACACACAT
NONE
OsAffx.25311.1.A1_at--933--2071Chr03:17673801..17673825 (25 bp)
ACATTTGCGGGACCCGCCTGCAAGC
NONE
OsAffx.25311.1.A1_at--240--5112Chr02:35595042..35595063 (22 bp)
GCAAATGCGGGCGTGCGGACGCGGG
LOC_Os02g58170
OsAffx.25311.1.A1_at--684--9291Chr03:17673652..17673676 (25 bp)
TCCGCTTCCGCGCCGAGGAAATCGA
NONE
OsAffx.25311.1.A1_at--1005--6172Chr03:17693094..17693118 (25 bp)
GAGGAGAGCGGCTTCCATTGCTCGC
NONE
OsAffx.25311.1.A1_at--1008--9331Chr03:17673449..17673473 (25 bp)
TCGCCGCCGGTAGACTGCGCGGAAT
NONE
OsAffx.25311.1.A1_at--553--4212Chr03:17673446..17673470 (25 bp)
CCGCCGGTAGACTGCGCGGAATGCA
NONE
Target Sequence 
TTTCTCGTACGAATTGAAGCCCATACGAGAGTGATTACACATGATTTTACACGCATAAACACCACACACACATTTGCGGG
ACCCGCCTGCAAGCCGCCGGGCAAATGCGGGCGTGCGGACGCGGGCGCAGCCTGCCCGCTCCAGCCGTGCGGGCAATGCG
GACGCGGCGCGGGCTGTCCGCAACCGCGCCGTCTGCACCCCTACCGTCTGCCTCCGTGTCCGCTTCCGCGCCGAGGAAAT
CGAGCTGCCATTGCGGCGTGGCGCGGCAGCGGCATGCGTGGGGAGCGAGCTTCTTGAGCTTCCCCGCAGCTGCGGCGGCG
GCGGCGGCAAGGAATCGAGAGACGGAGAAGGCGATGGCGATGCTGACGCCGCCTCGGGCGGCGAGGGGAGGAGGAGGAAG
GAGGAGAGCGGCTTCCATTGCTCGCCGCCGGTAGACTGCGCGGAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25311.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis