Browse Element(s) Details


Os.18195.1.S1_at

Description gb:AK105403.1
DB_XREF= gi:32990612
TID=Os.18195.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D08, full insert sequence.
FL= gb:AK073195.1 gb:AK105403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5821011/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein
LOC_Os02g58189NANA2+35610995..35611354NA
LOC_Os02g58200Os.23006.1.S1_at11/112+35615876..35616367expressed protein
LOC_Os02g58210Os.18195.1.S1_at11/112+35618268..35624929jmjC domain containing protein, expressed
LOC_Os02g58220Os.7052.1.S1_at10/112+35633876..35636693OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g58230Os.26956.1.S1_at11/112+35637135..35642039C2 domain containing protein, expressed
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18195.1.S1_at--871--5211Chr02:35624186..35624210 (25 bp)
GAATTTAGACGACTTCCATCTTCCC
LOC_Os02g58210
Os.18195.1.S1_at--904--6231Chr02:35624320..35624344 (25 bp)
GATGGCTTTCCATGCTCTGAATGAA
LOC_Os02g58210
Os.18195.1.S1_at--1139--1211Chr02:35624344..35624368 (25 bp)
AGTTCTAAACTTTCTGGATCCTCCT
LOC_Os02g58210
Os.18195.1.S1_at--688--6311Chr02:35624532..35624556 (25 bp)
GATGACTTGATTTGCTGCGTCCGGC
LOC_Os02g58210
Os.18195.1.S1_at--843--4291Chr02:35624559..35624583 (25 bp)
CCTCTCTGATCATCTTTTGTGGTGA
LOC_Os02g58210
Os.18195.1.S1_at--115--8291Chr02:35624701..35624725 (25 bp)
GGCTTGATACTTTTCCTTTTGGCTT
LOC_Os02g58210
Os.18195.1.S1_at--546--3251Chr02:35624729..35624753 (25 bp)
CAACTAACTAGCTGTCTGTCTGTCT
LOC_Os02g58210
Os.18195.1.S1_at--645--9751Chr02:35624785..35624809 (25 bp)
TAATCTGGTCCATGGTTTCAGCTGT
LOC_Os02g58210
Os.18195.1.S1_at--158--10531Chr02:35624801..35624825 (25 bp)
TTCAGCTGTAGCACATGATGTTCCA
LOC_Os02g58210
Os.18195.1.S1_at--794--731Chr02:35624818..35624842 (25 bp)
ATGTTCCATGTCTGCTTTTTCAAGG
LOC_Os02g58210
Os.18195.1.S1_at--955--6591Chr02:35624870..35624894 (25 bp)
GATTGATGGCCCTTTTGTTGGATTC
LOC_Os02g58210
Target Sequence 
GAATTTAGACGACTTCCATCTTCCCACAGGGCTAAAGAAGATAAGCTAGAGATCAAGAAGATGGCTTTCCATGCTCTGAA
TGAAGTTCTAAACTTTCTGGATCCTCCTTCCTCAGAAGGGTCGAAAGAAGCGGCGGAGAAGCCTCGAAGGGGGCGTGGTC
GCCCAAGAAAACACTAGCTGCAACAAGTGATGACTTGATTTGCTGCGTCCGGCTCCCTCTCTGATCATCTTTTGTGGTGA
TGAGTGGGCTAAAATCGTTCATGCATTTTGGAGGAAGGGGAGGAATCTTGTGCATGTCAAAATGTGGTAGCAATAGCATG
ATCGATGTAGGTAGGCTGCTAATGCTAATCAGTTAATGGCTTGATACTTTTCCTTTTGGCTTGAACAACTAACTAGCTGT
CTGTCTGTCTGTTTGACTTGTGTTAAGTGGATTCAGACATGTAATCTGGTCCATGGTTTCAGCTGTAGCACATGATGTTC
CATGTCTGCTTTTTCAAGGTTGTTGTACCCCCAACGAAACGGATGGGATTGATGGCCCTTTTGTTGGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis