Browse Element(s) Details


Os.7052.1.S1_at

Description gb:AB037145.1
DB_XREF= gi:13516745
GEN=OsRPA32
TID=Os.7052.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7052 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPA32 mRNA for replication protein A 30kDa, complete cds.
PROD=replication protein A 30kDa
FL= gb:AK103235.1 gb:AB037145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5822010/11OB-fold nucleic acid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58189NANA2+35610995..35611354NA
LOC_Os02g58200Os.23006.1.S1_at11/112+35615876..35616367expressed protein
LOC_Os02g58210Os.18195.1.S1_at11/112+35618268..35624929jmjC domain containing protein, expressed
LOC_Os02g58220Os.7052.1.S1_at10/112+35633876..35636693OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g58230Os.26956.1.S1_at11/112+35637135..35642039C2 domain containing protein, expressed
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7052.1.S1_at--525--231Chr02:35635083..35635107 (25 bp)
ATATTCTGCCATGGGATCCTCATCT
LOC_Os02g58220
Os.7052.1.S1_at--810--4251NONE
CCGGCACCAGTGCTCAGTGTAACAA
NONE
Os.7052.1.S1_at--1039--7291Chr02:35634876..35634900 (25 bp)
GTGCTGAATGTTTTCCGCGAACCAG
LOC_Os02g58220
Os.7052.1.S1_at--1096--6951Chr02:35634296..35634320 (25 bp)
GTAGCTATTGATTACCTCGCTGACA
LOC_Os02g58220
Os.7052.1.S1_at--861--1751Chr02:35634283..35634307 (25 bp)
ACCTCGCTGACATTGGGCACATATA
LOC_Os02g58220
Os.7052.1.S1_at--22--6111Chr02:35634245..35634269 (25 bp)
GAGTCTCACTACAAGTCAGCGTTCA
LOC_Os02g58220
Os.7052.1.S1_at--187--7651Chr02:35634210..35634234 (25 bp)
GGGATTGAAGCCTCAGTTACTTACT
LOC_Os02g58220
Os.7052.1.S1_at--643--10051Chr02:35634186..35634210 (25 bp)
TAGTATGTATCCTCTAGCCTCGAAG
LOC_Os02g58220
Os.7052.1.S1_at--734--6031Chr02:35634132..35634156 (25 bp)
GAGATGCTTCATGTTTGCTTGTCAT
LOC_Os02g58220
Os.7052.1.S1_at--127--4931Chr02:35634116..35634140 (25 bp)
GCTTGTCATACTAACCAGTGTGCGT
LOC_Os02g58220
Os.7052.1.S1_at--67--6811Chr02:35634089..35634113 (25 bp)
GTTTTGCTCCATCCAGTGAAATTAC
LOC_Os02g58220
Target Sequence 
ATATTCTGCCATGGGATCCTCATCTTCCAATGGCTTCAGTGAAATGACCACTCCGACCTCTGTGAAATCCAACCCGGCAC
CAGTGCTCAGTGTAACAAATGGATCAAAAACTGATTTGAACACAGANGTGCTGAATGTTTTCCGCGAACCAGCAAACGTC
GAGAGCGAGCATGGTGTGCACATTGATGAAATCGTGAAGCGCTTCAGGCTACCGGAGGCCAAGATCAAGGTAGCTATTGA
TTACCTCGCTGACATTGGGCACATATACTCAACAATCGACGAGTCTCACTACAAGTCAGCGTTCAATGAATAAAGGGGAT
TGAAGCCTCAGTTACTTACTAGTATGTATCCTCTAGCCTCGAAGCTGGCTGCAGCTGAAACTGAAGAACAATCGAGATGC
TTCATGTTTGCTTGTCATACTAACCAGTGTGCGTTTGTTTTGCTCCATCCAGTGAAATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis