Browse Element(s) Details


Os.26956.1.S1_at

Description gb:AK070520.1
DB_XREF= gi:32980544
TID=Os.26956.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058O06, full insert sequence.
FL= gb:AK070520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5823011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58200Os.23006.1.S1_at11/112+35615876..35616367expressed protein
LOC_Os02g58210Os.18195.1.S1_at11/112+35618268..35624929jmjC domain containing protein, expressed
LOC_Os02g58220Os.7052.1.S1_at10/112+35633876..35636693OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g58230Os.26956.1.S1_at11/112+35637135..35642039C2 domain containing protein, expressed
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26956.1.S1_at--775--2931Chr02:35637767..35637791 (25 bp)
AAGGCATTGTGTCGTCGTCTGAACC
LOC_Os02g58230
Os.26956.1.S1_at--180--7171Chr02:35637751..35637775 (25 bp)
GTCTGAACCCGGAAGCTTGAGAGAT
LOC_Os02g58230
Os.26956.1.S1_at--783--8911Chr02:35637724..35637748 (25 bp)
TGAGCAGGCTGCTAAATCCAGAGAT
LOC_Os02g58230
Os.26956.1.S1_at--550--1071Chr02:35637670..35637694 (25 bp)
AGGGACTGTATCCAATAGCTCCACA
LOC_Os02g58230
Os.26956.1.S1_at--218--7891Chr02:35637461..35637485 (25 bp)
GGTTCAGGCTATTTCAACCCTTGAA
LOC_Os02g58230
Os.26956.1.S1_at--796--8111Chr02:35637397..35637421 (25 bp)
GGACGATCCATCTGTCTGAATCTGA
LOC_Os02g58230
Os.26956.1.S1_at--847--5251Chr02:35637380..35637404 (25 bp)
GAATCTGATCATCCGCAGCTAGTAG
LOC_Os02g58230
Os.26956.1.S1_at--611--5611Chr02:35637312..35637336 (25 bp)
GACAAGTGTATATTCCATTCCCATG
LOC_Os02g58230
Os.26956.1.S1_at--156--2971Chr02:35637261..35637285 (25 bp)
AATGGCTTGGCTTTTGGCGGCTGTC
LOC_Os02g58230
Os.26956.1.S1_at--503--4291Chr02:35637233..35637257 (25 bp)
CCTCCCTTTTTCTATTTCATACGAT
LOC_Os02g58230
Os.26956.1.S1_at--1035--231Chr02:35637194..35637218 (25 bp)
ATATCCTTTTTGTGCAACCATCCAC
LOC_Os02g58230
Target Sequence 
AAGGCATTGTGTCGTCGTCTGAACCCGGAAGCTTGAGAGATAGTGAGCAGGCTGCTAAATCCAGAGATGGTGAAAATGCT
GCAGCAGCTGCTGATACAGGGACTGTATCCAATAGCTCCACAGATACTGCTNTAGTGTGGCTTGCTGCCATAACAAGTGT
GATGGTGCTGGTNTCATCCAACCTTGGTGGTTCAGGCTATTTCAACCCTTGAAGAGTTGATGCATGAAGAATCTGATCTG
ACTGGAGTATTTGGACGATCCATCTGTCTGAATCTGATCATCCGCAGCTAGTAGCAGAGGTCGTTTTGTTTTGATTTTTT
TTAACTTTATTTTTGCCGACAAGTGTATATTCCATTCCCATGTATCTAATGTTGCAGAGGAATCAAAGAATGGCTTGGCT
TTTGGCGGCTGTCTCTCCTCCCTTTTTCTATTTCATACGATTGACATGATGTAGCATATCCTTTTTGTGCAACCATCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis