Browse Element(s) Details


Os.23006.1.S1_at

Description gb:AK062497.1
DB_XREF= gi:32972515
TID=Os.23006.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-A03, full insert sequence.
FL= gb:AK062497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5820011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein
LOC_Os02g58189NANA2+35610995..35611354NA
LOC_Os02g58200Os.23006.1.S1_at11/112+35615876..35616367expressed protein
LOC_Os02g58210Os.18195.1.S1_at11/112+35618268..35624929jmjC domain containing protein, expressed
LOC_Os02g58220Os.7052.1.S1_at10/112+35633876..35636693OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g58230Os.26956.1.S1_at11/112+35637135..35642039C2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23006.1.S1_at--493--811Chr02:35616313..35616337 (25 bp)
ATGGTGTGGCTGCAGTACACCGCCA
LOC_Os02g58200
Os.23006.1.S1_at--397--5811Chr02:35616171..35616195 (25 bp)
GACGCCGTGTCCTCGAGGACTTCAT
LOC_Os02g58200
Os.23006.1.S1_at--428--5131Chr02:35616135..35616159 (25 bp)
GCAACCACGCCCTGGACCTGGAGGA
LOC_Os02g58200
Os.23006.1.S1_at--1093--10531Chr02:35616067..35616091 (25 bp)
TTCATCCCAGGTTCCCCGTCAGATT
LOC_Os02g58200
Os.23006.1.S1_at--439--3331Chr02:35616039..35616063 (25 bp)
CACTCTGCTGCTCTAATCTAATCTT
LOC_Os02g58200
Os.23006.1.S1_at--892--6971Chr02:35616014..35616038 (25 bp)
GTACCATGTGGATTGGATGCAACTC
LOC_Os02g58200
Os.23006.1.S1_at--81--7931Chr02:35616005..35616029 (25 bp)
GGATTGGATGCAACTCCACCTAGAC
LOC_Os02g58200
Os.23006.1.S1_at--582--2551Chr02:35615994..35616018 (25 bp)
AACTCCACCTAGACCTAGCAAGGAA
LOC_Os02g58200
Os.23006.1.S1_at--283--7931Chr02:35615957..35615981 (25 bp)
GGATTTCTATTTTACTTACTCACTC
LOC_Os02g58200
Os.23006.1.S1_at--1084--9891Chr02:35615941..35615965 (25 bp)
TACTCACTCACTGCTGTATGCATCA
LOC_Os02g58200
Os.23006.1.S1_at--252--6911Chr02:35615926..35615950 (25 bp)
GTATGCATCACTCTTTTGCCTAAAT
LOC_Os02g58200
Target Sequence 
ATGGTGTGGCTGCAGTACACCGCCACCCGCTCCCAGCGCGCCGCCACCGCCTGCTTCTTCCTCACCGGCGTCGCCCTCAT
CCTCGCCGCCGCCCGCCTCTCCTACGCCAACATCGAGCCCCAGCGCGCCAAGGCCGCCGACCGACGCCGTGTCCTCGAGG
ACTTCATCCGCCGCAAGCGCAACCACGCCCTGGACCTGGAGGATCCCCCTCCTAAACCCTAGCTCCACCTGCCTCCTCCT
TCTTCCTTCATCCCAGGTTCCCCGTCAGATTCCTCACTCTGCTGCTCTAATCTAATCTTGTACCATGTGGATTGGATGCA
ACTCCACCTAGACCTAGCAAGGAATAAATAGCATAGGGATTTCTATTTTACTTACTCACTCACTGCTGTATGCATCACTC
TTTTGCCTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis