Browse Element(s) Details


Os.54438.1.S1_x_at

Description gb:AK105163.1
DB_XREF= gi:32990372
TID=Os.54438.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D02, full insert sequence.
FL= gb:AK105163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5817011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein
LOC_Os02g58189NANA2+35610995..35611354NA
LOC_Os02g58200Os.23006.1.S1_at11/112+35615876..35616367expressed protein
LOC_Os02g58210Os.18195.1.S1_at11/112+35618268..35624929jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54438.1.S1_x_at--598--531Chr02:35590518..35590542 (25 bp)
ATCGCCACGGACGAGGAGATCCGCG
LOC_Os02g58170
Os.54438.1.S1_x_at--432--1291Chr02:35590534..35590558 (25 bp)
AGATCCGCGAGCTGACAGCTGGAGA
LOC_Os02g58170
Os.54438.1.S1_x_at--269--5911Chr02:35590730..35590754 (25 bp)
GAGCATCGAGAAGAACCCGTTCGTG
LOC_Os02g58170
Os.54438.1.S1_x_at--372--8611Chr02:35590768..35590792 (25 bp)
TGGTGCTGGCACAGGCGCTGCTCAA
LOC_Os02g58170
Os.54438.1.S1_x_at--681--9711Chr02:35590789..35590813 (25 bp)
TCAACTCCGGGCACGACGAGGAGGC
LOC_Os02g58170
Os.54438.1.S1_x_at--310--6112Chr02:35590909..35590933 (25 bp)
GAGTCCTCCGCGACGGAGCTCATCG
LOC_Os02g58170
Os.54438.1.S1_x_at--87--2971Chr02:35591004..35591028 (25 bp)
AATGGAATTAATCTCTCTCTGGAAT
LOC_Os02g58170
Os.54438.1.S1_x_at--536--3771Chr02:35591016..35591040 (25 bp)
CTCTCTCTGGAATTGGATTGTACTG
LOC_Os02g58170
Os.54438.1.S1_x_at--660--8491Chr02:35591023..35591047 (25 bp)
TGGAATTGGATTGTACTGTATGGTA
LOC_Os02g58170
Os.54438.1.S1_x_at--1059--3871Chr02:35591038..35591062 (25 bp)
CTGTATGGTATTGGTATGTACTCTA
LOC_Os02g58170
Os.54438.1.S1_x_at--1026--8491Chr02:35591071..35591095 (25 bp)
TGGAATAAATGTTAAATGGGCCGGA
LOC_Os02g58170
Target Sequence 
ATCGCCACGGACGAGGAGATCCGCGAGCTGACAGCTGGAGAGAGGAGCGTCGTGAAGAGGGAGGACGCGGAGCTGGAGCT
GGTGATCCCGCCGGTGTTCGAGCGGTGCAGCAAGGTGCTGGACGCGGCGGAGCAGAAGGAAGGCCGGGATCTGTACTGGG
AGGCGGTGTGCGGGGAGTGGGAGGAGGGGAAGACGGAGAGGCTGCTGCGGCGGAGCATCGAGAAGAACCCGTTCGTGGGG
GAGCCGTGGCTGGTGCTGGCACAGGCGCTGCTCAACTCCGGGCACGACGAGGAGGCGGAGGCGGCGGCGGAGGAGGGGGT
GAGGCTGGTGGTGGAGTGGGGGAGCAGCTGGGACAAGCGGATGTCGTGGGAGGGGTGGGTGTCGTGGGGAAGAGTCCTCC
GCGACGGAGCTCATCGCCGGCAATGGCCGCGCACCGCATGGGGCATCATCAACCTCGGCCTCGTCAAATAATCAATTAAA
TTAATTAATGGAATTAATCTCTCTCTGGAATTGGATTGTACTGTATGGTATTGGTATGTACTCTAATGAAGTATGGAATA
AATGTTAAATGGGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54438.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis