Browse Element(s) Details


Os.4723.1.S1_a_at

Description gb:AK122029.1
DB_XREF= gi:37991675
TID=Os.4723.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112F11, full insert sequence.
FL= gb:AK122029.1 gb:AK104364.1 gb:AK104532.1 gb:AK064830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5826011/11metallo-beta-lactamase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58220Os.7052.1.S1_at10/112+35633876..35636693OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g58230Os.26956.1.S1_at11/112+35637135..35642039C2 domain containing protein, expressed
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4723.1.S1_a_at--1073--71Chr02:35655908..35655928 (21 bp)
ATACCCCAGGTCATACTGAAGGTTC
LOC_Os02g58260
Os.4723.1.S1_a_at--29--10131Chr02:35655356..35655481 (25 bp)
TATGTACAGCAAGCAATCAGTGGGC
LOC_Os02g58260
Os.4723.1.S1_a_at--1108--2331Chr02:35655129..35655153 (25 bp)
AAAGACGTACGTGCTAAGGATTCAG
LOC_Os02g58260
Os.4723.1.S1_a_at--86--3251Chr02:35655077..35655101 (25 bp)
CAAGCTAGGAGCGTATTATAATTCT
LOC_Os02g58260
Os.4723.1.S1_a_at--1116--10571Chr02:35655056..35655080 (25 bp)
TTCTCTCTACCTTCATTGTGTATAA
LOC_Os02g58260
Os.4723.1.S1_a_at--584--2231Chr02:35655033..35655057 (25 bp)
AAATAACGACCGATTCTGGAATGAA
LOC_Os02g58260
Os.4723.1.S1_a_at--370--5951Chr02:35654999..35655023 (25 bp)
GAGAATGCACTTGCCATTTTGTCAG
LOC_Os02g58260
Os.4723.1.S1_a_at--587--3591Chr02:35654985..35655009 (25 bp)
CATTTTGTCAGCGAGAGTGGCACTT
LOC_Os02g58260
Os.4723.1.S1_a_at--841--3571Chr02:35654960..35654984 (25 bp)
CATATCCTTGGAAGATGATGGTACT
LOC_Os02g58260
Os.4723.1.S1_a_at--535--6251Chr02:35654944..35654968 (25 bp)
GATGGTACTGTTTTTGCTTCACGAC
LOC_Os02g58260
Os.4723.1.S1_a_at--149--4911Chr02:35654929..35654953 (25 bp)
GCTTCACGACATTTGCAATATATCA
LOC_Os02g58260
Target Sequence 
ATACCCCAGGTCATACTGAAGGTTCAGTCTGCTTATTCTACAAACCAGTAAAGGCGCTTTTCACTGGAGATCATGTTGCA
NAAATCAGAAGAATCTGATGATTTAGATCTCTTTCTTATGTACAGCAAGCAATCAGTGGGCTTGCAGCTGGACAGCATGA
GAAAATTGTTGAAGTTAGACTTCGAGTGGTTTTTACCTGGTCATGGCTATCGAATCCATTATAAAGACGTACGTGCTAAG
GATTCAGCAATCGAGTCCCTCATAGCTAACTACACAAGCTAGGAGCGTATTATAATTCTCTCTACCTTCATTGTGTATAA
ATAACGACCGATTCTGGAATGAAGGGGCAAGAGAGAATGCACTTGCCATTTTGTCAGCGAGAGTGGCACTTCATATCCTT
GGAAGATGATGGTACTGTTTTTGCTTCACGACATTTGCAATATATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4723.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis