Browse Element(s) Details


OsAffx.12689.1.S1_s_at

Description tigr:9630.m05814
TID=OsAffx.12689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5825011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58220Os.7052.1.S1_at10/112+35633876..35636693OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os02g58230Os.26956.1.S1_at11/112+35637135..35642039C2 domain containing protein, expressed
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12689.1.S1_s_at--981--4631Chr02:35654064..35654088 (25 bp)
GCGTTGCTGGAGATTCACTTATTAC
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--252--7411Chr02:35654136..35654160 (25 bp)
GTGATTCAGCTCCTATTGTTGGTGC
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--51--7791Chr02:35654156..35654180 (25 bp)
GGTGCTGATGCATTGGTTCCATACT
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--972--1091Chr02:35654182..35654206 (25 bp)
AGTGGACACAAACCTTTCGCTTCAG
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--50--6611Chr02:35654231..35654255 (25 bp)
GTTGGCGCAGAGACTTATGCTCATC
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--23--6511Chr02:35654267..35654291 (25 bp)
GATATGGGCATTGTGCGTGTCCTAA
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--997--4631Chr02:35654281..35654305 (25 bp)
GCGTGTCCTAATATTTCTACCACCA
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--316--10171Chr02:35654309..35654333 (25 bp)
TATCACCTCCTCTTTTCGATGGAAG
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--512--7871Chr02:35654336..35654360 (25 bp)
GGTTATGCCTCCACATTGGTCAGAA
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--110--5451Chr02:35654364..35654388 (25 bp)
GAACCGATCATTGGCCATGTTTGGC
LOC_Os02g58250
OsAffx.12689.1.S1_s_at--635--2131Chr02:35654422..35654446 (25 bp)
ACAGGGAGGATTTCTCTGGCCAAGA
LOC_Os02g58250
Target Sequence 
GCGTTGCTGGAGATTCACTTATTACCATCCTAAGAGGCAATGCAATTATTAAAAACGTTGTGTGGGAAGAAAGTGATTCA
GCTCCTATTGTTGGTGCTGATGCATTGGTTCCATACTCAGTGGACACAAACCTTTCGCTTCAGCGCATTGATGAAGACGA
ATTTGAGGTTGGCGCAGAGACTTATGCTCATCTAAGCAAGAGGGATATGGGCATTGTGCGTGTCCTAATATTTCTACCAC
CAAGGTATCACCTCCTCTTTTCGATGGAAGTAGGTTATGCCTCCACATTGGTCAGAATAAGAACCGATCATTGGCCATGT
TTGGCATATGTCGACGAATACTTGGAAGCGTTGCTCTAACAGGGAGGATTTCTCTGGCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12689.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis